miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14624 3' -55.8 NC_003521.1 + 103436 0.66 0.967687
Target:  5'- cGugAGCuccGCCaGGUCG-CGgcGGUUGCGc -3'
miRNA:   3'- -CugUCG---UGGaCCAGCuGCa-CCAACGC- -5'
14624 3' -55.8 NC_003521.1 + 100802 0.66 0.96459
Target:  5'- aGAgGGuCGCCUGGgcugCGACuGUGauuGUUGCGc -3'
miRNA:   3'- -CUgUC-GUGGACCa---GCUG-CAC---CAACGC- -5'
14624 3' -55.8 NC_003521.1 + 50781 0.66 0.96459
Target:  5'- cGCGGCGguCCUGGUCGAuCGgcgacGGUgaugGCa -3'
miRNA:   3'- cUGUCGU--GGACCAGCU-GCa----CCAa---CGc -5'
14624 3' -55.8 NC_003521.1 + 76330 0.66 0.961291
Target:  5'- cGACAGCugCggaGG-CGACGgugacGGcUGCGg -3'
miRNA:   3'- -CUGUCGugGa--CCaGCUGCa----CCaACGC- -5'
14624 3' -55.8 NC_003521.1 + 170387 0.66 0.957785
Target:  5'- aACGGUACUguuagUGGUuacCGACGUGGUgacggGCa -3'
miRNA:   3'- cUGUCGUGG-----ACCA---GCUGCACCAa----CGc -5'
14624 3' -55.8 NC_003521.1 + 167709 0.66 0.957785
Target:  5'- uGCAGCACCUccguggccacGGUgGauuGCGUGGcgcUGCGg -3'
miRNA:   3'- cUGUCGUGGA----------CCAgC---UGCACCa--ACGC- -5'
14624 3' -55.8 NC_003521.1 + 21760 0.66 0.957785
Target:  5'- uGCucauGCACCUGGgCGcCGUGGcgUGCc -3'
miRNA:   3'- cUGu---CGUGGACCaGCuGCACCa-ACGc -5'
14624 3' -55.8 NC_003521.1 + 6053 0.67 0.950135
Target:  5'- gGGCGGUAgCgGGUCGACGaaGGgaaUGCGa -3'
miRNA:   3'- -CUGUCGUgGaCCAGCUGCa-CCa--ACGC- -5'
14624 3' -55.8 NC_003521.1 + 187808 0.67 0.945985
Target:  5'- cGGCGGCgACCUGGguugggaguUUGugGUGGc-GCGa -3'
miRNA:   3'- -CUGUCG-UGGACC---------AGCugCACCaaCGC- -5'
14624 3' -55.8 NC_003521.1 + 113274 0.67 0.945985
Target:  5'- --gAGCACCUGGcCGACGgcg-UGCu -3'
miRNA:   3'- cugUCGUGGACCaGCUGCaccaACGc -5'
14624 3' -55.8 NC_003521.1 + 115434 0.67 0.941613
Target:  5'- cGCGGCGCggGGgUGACGgUGGUUGUGc -3'
miRNA:   3'- cUGUCGUGgaCCaGCUGC-ACCAACGC- -5'
14624 3' -55.8 NC_003521.1 + 212861 0.67 0.941613
Target:  5'- gGGCAGCGguaUGGUCGucguCGUGGacGCGg -3'
miRNA:   3'- -CUGUCGUgg-ACCAGCu---GCACCaaCGC- -5'
14624 3' -55.8 NC_003521.1 + 70101 0.67 0.941613
Target:  5'- --gGGCACCUGGcCGGCGUGcc-GCc -3'
miRNA:   3'- cugUCGUGGACCaGCUGCACcaaCGc -5'
14624 3' -55.8 NC_003521.1 + 39832 0.67 0.941613
Target:  5'- cGAUGGCGCCUGcuuggccucCGGCGUGGggcUUGCa -3'
miRNA:   3'- -CUGUCGUGGACca-------GCUGCACC---AACGc -5'
14624 3' -55.8 NC_003521.1 + 166672 0.67 0.941613
Target:  5'- aGCGGCACCUGGgcccCGUGGc-GCGc -3'
miRNA:   3'- cUGUCGUGGACCagcuGCACCaaCGC- -5'
14624 3' -55.8 NC_003521.1 + 240059 0.67 0.941613
Target:  5'- cGAUGGCGCCUGcuuggccucCGGCGUGGggcUUGCa -3'
miRNA:   3'- -CUGUCGUGGACca-------GCUGCACC---AACGc -5'
14624 3' -55.8 NC_003521.1 + 197271 0.67 0.937019
Target:  5'- cGCGGCGCC-GG-CGGCG-GGgaGCGg -3'
miRNA:   3'- cUGUCGUGGaCCaGCUGCaCCaaCGC- -5'
14624 3' -55.8 NC_003521.1 + 87725 0.67 0.937019
Target:  5'- cGCGcGCGCCcGG-CGGCGUGGUggGCc -3'
miRNA:   3'- cUGU-CGUGGaCCaGCUGCACCAa-CGc -5'
14624 3' -55.8 NC_003521.1 + 123208 0.67 0.937019
Target:  5'- uACGGCGCCgGGUagGACGgGGgcgGCGg -3'
miRNA:   3'- cUGUCGUGGaCCAg-CUGCaCCaa-CGC- -5'
14624 3' -55.8 NC_003521.1 + 213115 0.67 0.9322
Target:  5'- cGAC-GCGCUgGGUgUGGCGUGGU-GCGg -3'
miRNA:   3'- -CUGuCGUGGaCCA-GCUGCACCAaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.