Results 1 - 20 of 60 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14624 | 3' | -55.8 | NC_003521.1 | + | 103436 | 0.66 | 0.967687 |
Target: 5'- cGugAGCuccGCCaGGUCG-CGgcGGUUGCGc -3' miRNA: 3'- -CugUCG---UGGaCCAGCuGCa-CCAACGC- -5' |
|||||||
14624 | 3' | -55.8 | NC_003521.1 | + | 50781 | 0.66 | 0.96459 |
Target: 5'- cGCGGCGguCCUGGUCGAuCGgcgacGGUgaugGCa -3' miRNA: 3'- cUGUCGU--GGACCAGCU-GCa----CCAa---CGc -5' |
|||||||
14624 | 3' | -55.8 | NC_003521.1 | + | 100802 | 0.66 | 0.96459 |
Target: 5'- aGAgGGuCGCCUGGgcugCGACuGUGauuGUUGCGc -3' miRNA: 3'- -CUgUC-GUGGACCa---GCUG-CAC---CAACGC- -5' |
|||||||
14624 | 3' | -55.8 | NC_003521.1 | + | 76330 | 0.66 | 0.961291 |
Target: 5'- cGACAGCugCggaGG-CGACGgugacGGcUGCGg -3' miRNA: 3'- -CUGUCGugGa--CCaGCUGCa----CCaACGC- -5' |
|||||||
14624 | 3' | -55.8 | NC_003521.1 | + | 170387 | 0.66 | 0.957785 |
Target: 5'- aACGGUACUguuagUGGUuacCGACGUGGUgacggGCa -3' miRNA: 3'- cUGUCGUGG-----ACCA---GCUGCACCAa----CGc -5' |
|||||||
14624 | 3' | -55.8 | NC_003521.1 | + | 21760 | 0.66 | 0.957785 |
Target: 5'- uGCucauGCACCUGGgCGcCGUGGcgUGCc -3' miRNA: 3'- cUGu---CGUGGACCaGCuGCACCa-ACGc -5' |
|||||||
14624 | 3' | -55.8 | NC_003521.1 | + | 167709 | 0.66 | 0.957785 |
Target: 5'- uGCAGCACCUccguggccacGGUgGauuGCGUGGcgcUGCGg -3' miRNA: 3'- cUGUCGUGGA----------CCAgC---UGCACCa--ACGC- -5' |
|||||||
14624 | 3' | -55.8 | NC_003521.1 | + | 6053 | 0.67 | 0.950135 |
Target: 5'- gGGCGGUAgCgGGUCGACGaaGGgaaUGCGa -3' miRNA: 3'- -CUGUCGUgGaCCAGCUGCa-CCa--ACGC- -5' |
|||||||
14624 | 3' | -55.8 | NC_003521.1 | + | 113274 | 0.67 | 0.945985 |
Target: 5'- --gAGCACCUGGcCGACGgcg-UGCu -3' miRNA: 3'- cugUCGUGGACCaGCUGCaccaACGc -5' |
|||||||
14624 | 3' | -55.8 | NC_003521.1 | + | 187808 | 0.67 | 0.945985 |
Target: 5'- cGGCGGCgACCUGGguugggaguUUGugGUGGc-GCGa -3' miRNA: 3'- -CUGUCG-UGGACC---------AGCugCACCaaCGC- -5' |
|||||||
14624 | 3' | -55.8 | NC_003521.1 | + | 70101 | 0.67 | 0.941613 |
Target: 5'- --gGGCACCUGGcCGGCGUGcc-GCc -3' miRNA: 3'- cugUCGUGGACCaGCUGCACcaaCGc -5' |
|||||||
14624 | 3' | -55.8 | NC_003521.1 | + | 39832 | 0.67 | 0.941613 |
Target: 5'- cGAUGGCGCCUGcuuggccucCGGCGUGGggcUUGCa -3' miRNA: 3'- -CUGUCGUGGACca-------GCUGCACC---AACGc -5' |
|||||||
14624 | 3' | -55.8 | NC_003521.1 | + | 166672 | 0.67 | 0.941613 |
Target: 5'- aGCGGCACCUGGgcccCGUGGc-GCGc -3' miRNA: 3'- cUGUCGUGGACCagcuGCACCaaCGC- -5' |
|||||||
14624 | 3' | -55.8 | NC_003521.1 | + | 240059 | 0.67 | 0.941613 |
Target: 5'- cGAUGGCGCCUGcuuggccucCGGCGUGGggcUUGCa -3' miRNA: 3'- -CUGUCGUGGACca-------GCUGCACC---AACGc -5' |
|||||||
14624 | 3' | -55.8 | NC_003521.1 | + | 212861 | 0.67 | 0.941613 |
Target: 5'- gGGCAGCGguaUGGUCGucguCGUGGacGCGg -3' miRNA: 3'- -CUGUCGUgg-ACCAGCu---GCACCaaCGC- -5' |
|||||||
14624 | 3' | -55.8 | NC_003521.1 | + | 115434 | 0.67 | 0.941613 |
Target: 5'- cGCGGCGCggGGgUGACGgUGGUUGUGc -3' miRNA: 3'- cUGUCGUGgaCCaGCUGC-ACCAACGC- -5' |
|||||||
14624 | 3' | -55.8 | NC_003521.1 | + | 197271 | 0.67 | 0.937019 |
Target: 5'- cGCGGCGCC-GG-CGGCG-GGgaGCGg -3' miRNA: 3'- cUGUCGUGGaCCaGCUGCaCCaaCGC- -5' |
|||||||
14624 | 3' | -55.8 | NC_003521.1 | + | 123208 | 0.67 | 0.937019 |
Target: 5'- uACGGCGCCgGGUagGACGgGGgcgGCGg -3' miRNA: 3'- cUGUCGUGGaCCAg-CUGCaCCaa-CGC- -5' |
|||||||
14624 | 3' | -55.8 | NC_003521.1 | + | 87725 | 0.67 | 0.937019 |
Target: 5'- cGCGcGCGCCcGG-CGGCGUGGUggGCc -3' miRNA: 3'- cUGU-CGUGGaCCaGCUGCACCAa-CGc -5' |
|||||||
14624 | 3' | -55.8 | NC_003521.1 | + | 108281 | 0.67 | 0.9322 |
Target: 5'- cGGCGGCACCgagGG-CgGugGUGGcgGUGa -3' miRNA: 3'- -CUGUCGUGGa--CCaG-CugCACCaaCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home