miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14625 3' -60.2 NC_003521.1 + 88051 0.65 0.869579
Target:  5'- -gAGCGCGCggaugaggucgcggUGGUCggcggcGCCCGUgaccacgggccacUCGGCGa -3'
miRNA:   3'- ggUCGCGCG--------------ACUAG------UGGGCG-------------AGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 32741 0.66 0.86819
Target:  5'- aCCAGCGgGCgcgGAggaaccuccuucucuUCccuCCCGCUuccucaCGGCGa -3'
miRNA:   3'- -GGUCGCgCGa--CU---------------AGu--GGGCGA------GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 197863 0.66 0.865391
Target:  5'- gCCGGCGgGUcg--CGCUCGCUgGGCu -3'
miRNA:   3'- -GGUCGCgCGacuaGUGGGCGAgCCGc -5'
14625 3' -60.2 NC_003521.1 + 77079 0.66 0.865391
Target:  5'- -gAGCGcCGCUG--UugCCGC-CGGCGc -3'
miRNA:   3'- ggUCGC-GCGACuaGugGGCGaGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 102843 0.66 0.865391
Target:  5'- -aAGCGCGCcaGggCGCCCGU--GGCGu -3'
miRNA:   3'- ggUCGCGCGa-CuaGUGGGCGagCCGC- -5'
14625 3' -60.2 NC_003521.1 + 69290 0.66 0.865391
Target:  5'- aCCAGCGCGCag--C-CCCGacacagggCGGCGc -3'
miRNA:   3'- -GGUCGCGCGacuaGuGGGCga------GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 225012 0.66 0.865391
Target:  5'- cCCAGCaCGaUGAg---CCGCUCGGCGc -3'
miRNA:   3'- -GGUCGcGCgACUagugGGCGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 17797 0.66 0.865391
Target:  5'- gUCGGCGUGCUG---GCCgUGCgacCGGCGg -3'
miRNA:   3'- -GGUCGCGCGACuagUGG-GCGa--GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 175315 0.66 0.864686
Target:  5'- cCCAGCugacaGCGCUcgaugaaGGUCGCCUGCcUGGUc -3'
miRNA:   3'- -GGUCG-----CGCGA-------CUAGUGGGCGaGCCGc -5'
14625 3' -60.2 NC_003521.1 + 153893 0.66 0.863272
Target:  5'- uCCAGCGCGCgguagGGgaacagCGCCgCGUgcagcuuccacuccUCGGCc -3'
miRNA:   3'- -GGUCGCGCGa----CUa-----GUGG-GCG--------------AGCCGc -5'
14625 3' -60.2 NC_003521.1 + 237027 0.66 0.858263
Target:  5'- aUCAGCGUGCUgGAUCGCggUGCUCuGUGc -3'
miRNA:   3'- -GGUCGCGCGA-CUAGUGg-GCGAGcCGC- -5'
14625 3' -60.2 NC_003521.1 + 112318 0.66 0.858263
Target:  5'- cCCAGCGacuCGCUG-UCGCagGC-CGGCGc -3'
miRNA:   3'- -GGUCGC---GCGACuAGUGggCGaGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 170059 0.66 0.858263
Target:  5'- uCCAcGUGCaGCUGGUgAUCgGCcgCGGCGc -3'
miRNA:   3'- -GGU-CGCG-CGACUAgUGGgCGa-GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 29442 0.66 0.858263
Target:  5'- aCCAGCGCGUgggccaguucaUGAUCcgcgACCgGCUgCuGCGg -3'
miRNA:   3'- -GGUCGCGCG-----------ACUAG----UGGgCGA-GcCGC- -5'
14625 3' -60.2 NC_003521.1 + 137345 0.66 0.858263
Target:  5'- gCCAGCGCGUgccgcaguucGUCGCCuaCGCcgUGGCGc -3'
miRNA:   3'- -GGUCGCGCGac--------UAGUGG--GCGa-GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 41110 0.66 0.8539
Target:  5'- gCGGUgGUGCUGGUCACCCaguuGCUguccaaccacgugcaCGGCu -3'
miRNA:   3'- gGUCG-CGCGACUAGUGGG----CGA---------------GCCGc -5'
14625 3' -60.2 NC_003521.1 + 70417 0.66 0.850956
Target:  5'- aCUAGCGUGCccGUCACCaCG-UCGGUa -3'
miRNA:   3'- -GGUCGCGCGacUAGUGG-GCgAGCCGc -5'
14625 3' -60.2 NC_003521.1 + 181467 0.66 0.850956
Target:  5'- cCCAGUcgGCGCaGAcgGCCCaucccaGCUCGGUGa -3'
miRNA:   3'- -GGUCG--CGCGaCUagUGGG------CGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 196416 0.66 0.850956
Target:  5'- gCAGCGgcacagacaguCGCUG-UCGCCCgGgUCGGCc -3'
miRNA:   3'- gGUCGC-----------GCGACuAGUGGG-CgAGCCGc -5'
14625 3' -60.2 NC_003521.1 + 116869 0.66 0.850956
Target:  5'- aCCuGCGCGCgcagugGcgCGgCUGCggCGGCGc -3'
miRNA:   3'- -GGuCGCGCGa-----CuaGUgGGCGa-GCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.