Results 1 - 20 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14625 | 5' | -55.8 | NC_003521.1 | + | 123569 | 0.66 | 0.971807 |
Target: 5'- -aCGGCGGugGCGggauggCGgcggCGCCGGGa- -3' miRNA: 3'- caGCUGCUugCGCa-----GCa---GUGGUCCgu -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 213533 | 0.66 | 0.971807 |
Target: 5'- -aUGGCGGGCaGC-UCGgagCACCAGGUg -3' miRNA: 3'- caGCUGCUUG-CGcAGCa--GUGGUCCGu -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 229311 | 0.66 | 0.971807 |
Target: 5'- uGUCGACGGuGCGCGgagcgacUGUUGgCAGGCu -3' miRNA: 3'- -CAGCUGCU-UGCGCa------GCAGUgGUCCGu -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 16494 | 0.66 | 0.971536 |
Target: 5'- aGUCGACucAGCGCGa-GUCACCgugacggGGGCGu -3' miRNA: 3'- -CAGCUGc-UUGCGCagCAGUGG-------UCCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 23078 | 0.66 | 0.969011 |
Target: 5'- cGUCuGugGugucUGCGUcCGUgGCCGGGCGg -3' miRNA: 3'- -CAG-CugCuu--GCGCA-GCAgUGGUCCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 180070 | 0.66 | 0.969011 |
Target: 5'- uGUCGcACGAugucguUGCG-CGUCACCccguccagggaGGGCAg -3' miRNA: 3'- -CAGC-UGCUu-----GCGCaGCAGUGG-----------UCCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 135894 | 0.66 | 0.969011 |
Target: 5'- -cCGACGGcgucGCGCucGUCGUCAUCGucgucggacGGCAg -3' miRNA: 3'- caGCUGCU----UGCG--CAGCAGUGGU---------CCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 45445 | 0.66 | 0.96901 |
Target: 5'- -aCGguACGGGCGCcUCGUCcUCGGGCGu -3' miRNA: 3'- caGC--UGCUUGCGcAGCAGuGGUCCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 35811 | 0.66 | 0.96901 |
Target: 5'- cGUCG-CGGcACGcCGUCGUUAgCGGGUc -3' miRNA: 3'- -CAGCuGCU-UGC-GCAGCAGUgGUCCGu -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 25551 | 0.66 | 0.96901 |
Target: 5'- -aCGGCGGACGCuGUUGUg--CAGGCGg -3' miRNA: 3'- caGCUGCUUGCG-CAGCAgugGUCCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 72388 | 0.66 | 0.96901 |
Target: 5'- cUCGGCGucCuCGUCGaUCACCAgcGGCGg -3' miRNA: 3'- cAGCUGCuuGcGCAGC-AGUGGU--CCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 12626 | 0.66 | 0.96872 |
Target: 5'- -cCGugGAACGCGUgcguuccuuccagCGUCACCAcgaacaGCGc -3' miRNA: 3'- caGCugCUUGCGCA-------------GCAGUGGUc-----CGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 91668 | 0.66 | 0.966022 |
Target: 5'- --aGACGGACGaCGagGUgGCCAcGGCGu -3' miRNA: 3'- cagCUGCUUGC-GCagCAgUGGU-CCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 110882 | 0.66 | 0.966022 |
Target: 5'- -gCGGCaGAACuGCGcCGUCucgGCCAGGUg -3' miRNA: 3'- caGCUG-CUUG-CGCaGCAG---UGGUCCGu -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 150765 | 0.66 | 0.966022 |
Target: 5'- cUCcGCGAGCGCGUCGgcgUC-CCGGaGCu -3' miRNA: 3'- cAGcUGCUUGCGCAGC---AGuGGUC-CGu -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 152599 | 0.66 | 0.966022 |
Target: 5'- -aCGAUGGccuccucgGCGCccugGUUgGUCACCAGGCGg -3' miRNA: 3'- caGCUGCU--------UGCG----CAG-CAGUGGUCCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 139847 | 0.66 | 0.966022 |
Target: 5'- -gCGA-GAACGcCGUgCG-CGCCGGGCAc -3' miRNA: 3'- caGCUgCUUGC-GCA-GCaGUGGUCCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 179783 | 0.66 | 0.966022 |
Target: 5'- --aGACGGAgGCGUC--CACCuGGCGg -3' miRNA: 3'- cagCUGCUUgCGCAGcaGUGGuCCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 166619 | 0.66 | 0.962837 |
Target: 5'- -aCGugGcagaaGACgGCGUCGggccgcgCGCCGGGCGc -3' miRNA: 3'- caGCugC-----UUG-CGCAGCa------GUGGUCCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 155265 | 0.66 | 0.962837 |
Target: 5'- -gCGGCGGcgGCGCcucaggccCGUCGCUGGGCAa -3' miRNA: 3'- caGCUGCU--UGCGca------GCAGUGGUCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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