miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14625 5' -55.8 NC_003521.1 + 123569 0.66 0.971807
Target:  5'- -aCGGCGGugGCGggauggCGgcggCGCCGGGa- -3'
miRNA:   3'- caGCUGCUugCGCa-----GCa---GUGGUCCgu -5'
14625 5' -55.8 NC_003521.1 + 213533 0.66 0.971807
Target:  5'- -aUGGCGGGCaGC-UCGgagCACCAGGUg -3'
miRNA:   3'- caGCUGCUUG-CGcAGCa--GUGGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 229311 0.66 0.971807
Target:  5'- uGUCGACGGuGCGCGgagcgacUGUUGgCAGGCu -3'
miRNA:   3'- -CAGCUGCU-UGCGCa------GCAGUgGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 16494 0.66 0.971536
Target:  5'- aGUCGACucAGCGCGa-GUCACCgugacggGGGCGu -3'
miRNA:   3'- -CAGCUGc-UUGCGCagCAGUGG-------UCCGU- -5'
14625 5' -55.8 NC_003521.1 + 180070 0.66 0.969011
Target:  5'- uGUCGcACGAugucguUGCG-CGUCACCccguccagggaGGGCAg -3'
miRNA:   3'- -CAGC-UGCUu-----GCGCaGCAGUGG-----------UCCGU- -5'
14625 5' -55.8 NC_003521.1 + 23078 0.66 0.969011
Target:  5'- cGUCuGugGugucUGCGUcCGUgGCCGGGCGg -3'
miRNA:   3'- -CAG-CugCuu--GCGCA-GCAgUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 135894 0.66 0.969011
Target:  5'- -cCGACGGcgucGCGCucGUCGUCAUCGucgucggacGGCAg -3'
miRNA:   3'- caGCUGCU----UGCG--CAGCAGUGGU---------CCGU- -5'
14625 5' -55.8 NC_003521.1 + 45445 0.66 0.96901
Target:  5'- -aCGguACGGGCGCcUCGUCcUCGGGCGu -3'
miRNA:   3'- caGC--UGCUUGCGcAGCAGuGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 25551 0.66 0.96901
Target:  5'- -aCGGCGGACGCuGUUGUg--CAGGCGg -3'
miRNA:   3'- caGCUGCUUGCG-CAGCAgugGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 72388 0.66 0.96901
Target:  5'- cUCGGCGucCuCGUCGaUCACCAgcGGCGg -3'
miRNA:   3'- cAGCUGCuuGcGCAGC-AGUGGU--CCGU- -5'
14625 5' -55.8 NC_003521.1 + 35811 0.66 0.96901
Target:  5'- cGUCG-CGGcACGcCGUCGUUAgCGGGUc -3'
miRNA:   3'- -CAGCuGCU-UGC-GCAGCAGUgGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 12626 0.66 0.96872
Target:  5'- -cCGugGAACGCGUgcguuccuuccagCGUCACCAcgaacaGCGc -3'
miRNA:   3'- caGCugCUUGCGCA-------------GCAGUGGUc-----CGU- -5'
14625 5' -55.8 NC_003521.1 + 91668 0.66 0.966022
Target:  5'- --aGACGGACGaCGagGUgGCCAcGGCGu -3'
miRNA:   3'- cagCUGCUUGC-GCagCAgUGGU-CCGU- -5'
14625 5' -55.8 NC_003521.1 + 150765 0.66 0.966022
Target:  5'- cUCcGCGAGCGCGUCGgcgUC-CCGGaGCu -3'
miRNA:   3'- cAGcUGCUUGCGCAGC---AGuGGUC-CGu -5'
14625 5' -55.8 NC_003521.1 + 152599 0.66 0.966022
Target:  5'- -aCGAUGGccuccucgGCGCccugGUUgGUCACCAGGCGg -3'
miRNA:   3'- caGCUGCU--------UGCG----CAG-CAGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 110882 0.66 0.966022
Target:  5'- -gCGGCaGAACuGCGcCGUCucgGCCAGGUg -3'
miRNA:   3'- caGCUG-CUUG-CGCaGCAG---UGGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 179783 0.66 0.966022
Target:  5'- --aGACGGAgGCGUC--CACCuGGCGg -3'
miRNA:   3'- cagCUGCUUgCGCAGcaGUGGuCCGU- -5'
14625 5' -55.8 NC_003521.1 + 139847 0.66 0.966022
Target:  5'- -gCGA-GAACGcCGUgCG-CGCCGGGCAc -3'
miRNA:   3'- caGCUgCUUGC-GCA-GCaGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 166619 0.66 0.962837
Target:  5'- -aCGugGcagaaGACgGCGUCGggccgcgCGCCGGGCGc -3'
miRNA:   3'- caGCugC-----UUG-CGCAGCa------GUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 155265 0.66 0.962837
Target:  5'- -gCGGCGGcgGCGCcucaggccCGUCGCUGGGCAa -3'
miRNA:   3'- caGCUGCU--UGCGca------GCAGUGGUCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.