miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14626 3' -49.6 NC_003521.1 + 95017 0.66 0.999826
Target:  5'- uUGGcGUCGAagacgaucaccuccgAGCGCUCCGUcuuguugagguaGAGCAGg -3'
miRNA:   3'- cGCC-UAGCU---------------UCGCGAGGCAa-----------UUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 212959 0.66 0.999817
Target:  5'- uGCGG-UCGAGGUcCUCCGUgccguuACGa -3'
miRNA:   3'- -CGCCuAGCUUCGcGAGGCAauu---UGUc -5'
14626 3' -49.6 NC_003521.1 + 97534 0.66 0.999817
Target:  5'- gGUGG-UCGAGGCGCUC----GAACAu -3'
miRNA:   3'- -CGCCuAGCUUCGCGAGgcaaUUUGUc -5'
14626 3' -49.6 NC_003521.1 + 70948 0.66 0.999817
Target:  5'- aGCGag-CGGAGCgGCUCCG---GACGGa -3'
miRNA:   3'- -CGCcuaGCUUCG-CGAGGCaauUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 235958 0.66 0.999817
Target:  5'- aGCGGAUCGAGGcCGCgauucgaCGUc-GACGc -3'
miRNA:   3'- -CGCCUAGCUUC-GCGag-----GCAauUUGUc -5'
14626 3' -49.6 NC_003521.1 + 135812 0.66 0.999733
Target:  5'- gGCGGAggGAGGCGCggcgacgaacgcucCCGUgcccaUGAGCAc -3'
miRNA:   3'- -CGCCUagCUUCGCGa-------------GGCA-----AUUUGUc -5'
14626 3' -49.6 NC_003521.1 + 196332 0.66 0.999707
Target:  5'- gGCcGGUUGuuGCGCUgcgucaCGUUGGACAGg -3'
miRNA:   3'- -CGcCUAGCuuCGCGAg-----GCAAUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 109288 0.66 0.999707
Target:  5'- cCGGGUagGAGGUGC-CC-UUGAGCAGg -3'
miRNA:   3'- cGCCUAg-CUUCGCGaGGcAAUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 45226 0.66 0.999707
Target:  5'- uGauGAUCGAAgGCGCcgcCCGgcAGACGGg -3'
miRNA:   3'- -CgcCUAGCUU-CGCGa--GGCaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 106246 0.66 0.999707
Target:  5'- uGgGGAUCuu-GCGCUcCCGU--GACAGc -3'
miRNA:   3'- -CgCCUAGcuuCGCGA-GGCAauUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 85395 0.66 0.999701
Target:  5'- aGCGGGUCGGccAGCucgcacaGCUCCuggUAGGCGc -3'
miRNA:   3'- -CGCCUAGCU--UCG-------CGAGGca-AUUUGUc -5'
14626 3' -49.6 NC_003521.1 + 148468 0.66 0.999633
Target:  5'- aGCGGAcgggcaggaCGGAGgGUUCCGggagcgAGGCGGg -3'
miRNA:   3'- -CGCCUa--------GCUUCgCGAGGCaa----UUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 178793 0.66 0.999633
Target:  5'- cGCGGGacgggCGAGGCauGC-CCGgcGGGCGGg -3'
miRNA:   3'- -CGCCUa----GCUUCG--CGaGGCaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 126693 0.66 0.999633
Target:  5'- cGCuGAUgGAGGCGaacaugCCGgUGAGCAGa -3'
miRNA:   3'- -CGcCUAgCUUCGCga----GGCaAUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 223687 0.66 0.999633
Target:  5'- uCGGG-CGAAGCGCgCCG----GCAGg -3'
miRNA:   3'- cGCCUaGCUUCGCGaGGCaauuUGUC- -5'
14626 3' -49.6 NC_003521.1 + 61609 0.66 0.999633
Target:  5'- -gGGggCGcAGCGCUCCaacGGACGGg -3'
miRNA:   3'- cgCCuaGCuUCGCGAGGcaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 92307 0.66 0.999544
Target:  5'- cGCGGGagGAGGCGCagCCGc--GGCAu -3'
miRNA:   3'- -CGCCUagCUUCGCGa-GGCaauUUGUc -5'
14626 3' -49.6 NC_003521.1 + 179073 0.66 0.999544
Target:  5'- aGCGGGUCGc-GUGC-CCGUcgucgguGACAGu -3'
miRNA:   3'- -CGCCUAGCuuCGCGaGGCAau-----UUGUC- -5'
14626 3' -49.6 NC_003521.1 + 97576 0.66 0.999544
Target:  5'- cGCGGAUgGAGGUggugaugacguGCUC-GUUgGAGCAGg -3'
miRNA:   3'- -CGCCUAgCUUCG-----------CGAGgCAA-UUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 153610 0.66 0.999544
Target:  5'- aGCGGG-CGGAGCGaCUUCGUc-AACGu -3'
miRNA:   3'- -CGCCUaGCUUCGC-GAGGCAauUUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.