Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14626 | 3' | -49.6 | NC_003521.1 | + | 95017 | 0.66 | 0.999826 |
Target: 5'- uUGGcGUCGAagacgaucaccuccgAGCGCUCCGUcuuguugagguaGAGCAGg -3' miRNA: 3'- cGCC-UAGCU---------------UCGCGAGGCAa-----------UUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 212959 | 0.66 | 0.999817 |
Target: 5'- uGCGG-UCGAGGUcCUCCGUgccguuACGa -3' miRNA: 3'- -CGCCuAGCUUCGcGAGGCAauu---UGUc -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 97534 | 0.66 | 0.999817 |
Target: 5'- gGUGG-UCGAGGCGCUC----GAACAu -3' miRNA: 3'- -CGCCuAGCUUCGCGAGgcaaUUUGUc -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 70948 | 0.66 | 0.999817 |
Target: 5'- aGCGag-CGGAGCgGCUCCG---GACGGa -3' miRNA: 3'- -CGCcuaGCUUCG-CGAGGCaauUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 235958 | 0.66 | 0.999817 |
Target: 5'- aGCGGAUCGAGGcCGCgauucgaCGUc-GACGc -3' miRNA: 3'- -CGCCUAGCUUC-GCGag-----GCAauUUGUc -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 135812 | 0.66 | 0.999733 |
Target: 5'- gGCGGAggGAGGCGCggcgacgaacgcucCCGUgcccaUGAGCAc -3' miRNA: 3'- -CGCCUagCUUCGCGa-------------GGCA-----AUUUGUc -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 196332 | 0.66 | 0.999707 |
Target: 5'- gGCcGGUUGuuGCGCUgcgucaCGUUGGACAGg -3' miRNA: 3'- -CGcCUAGCuuCGCGAg-----GCAAUUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 109288 | 0.66 | 0.999707 |
Target: 5'- cCGGGUagGAGGUGC-CC-UUGAGCAGg -3' miRNA: 3'- cGCCUAg-CUUCGCGaGGcAAUUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 45226 | 0.66 | 0.999707 |
Target: 5'- uGauGAUCGAAgGCGCcgcCCGgcAGACGGg -3' miRNA: 3'- -CgcCUAGCUU-CGCGa--GGCaaUUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 106246 | 0.66 | 0.999707 |
Target: 5'- uGgGGAUCuu-GCGCUcCCGU--GACAGc -3' miRNA: 3'- -CgCCUAGcuuCGCGA-GGCAauUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 85395 | 0.66 | 0.999701 |
Target: 5'- aGCGGGUCGGccAGCucgcacaGCUCCuggUAGGCGc -3' miRNA: 3'- -CGCCUAGCU--UCG-------CGAGGca-AUUUGUc -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 148468 | 0.66 | 0.999633 |
Target: 5'- aGCGGAcgggcaggaCGGAGgGUUCCGggagcgAGGCGGg -3' miRNA: 3'- -CGCCUa--------GCUUCgCGAGGCaa----UUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 178793 | 0.66 | 0.999633 |
Target: 5'- cGCGGGacgggCGAGGCauGC-CCGgcGGGCGGg -3' miRNA: 3'- -CGCCUa----GCUUCG--CGaGGCaaUUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 126693 | 0.66 | 0.999633 |
Target: 5'- cGCuGAUgGAGGCGaacaugCCGgUGAGCAGa -3' miRNA: 3'- -CGcCUAgCUUCGCga----GGCaAUUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 223687 | 0.66 | 0.999633 |
Target: 5'- uCGGG-CGAAGCGCgCCG----GCAGg -3' miRNA: 3'- cGCCUaGCUUCGCGaGGCaauuUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 61609 | 0.66 | 0.999633 |
Target: 5'- -gGGggCGcAGCGCUCCaacGGACGGg -3' miRNA: 3'- cgCCuaGCuUCGCGAGGcaaUUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 92307 | 0.66 | 0.999544 |
Target: 5'- cGCGGGagGAGGCGCagCCGc--GGCAu -3' miRNA: 3'- -CGCCUagCUUCGCGa-GGCaauUUGUc -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 179073 | 0.66 | 0.999544 |
Target: 5'- aGCGGGUCGc-GUGC-CCGUcgucgguGACAGu -3' miRNA: 3'- -CGCCUAGCuuCGCGaGGCAau-----UUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 97576 | 0.66 | 0.999544 |
Target: 5'- cGCGGAUgGAGGUggugaugacguGCUC-GUUgGAGCAGg -3' miRNA: 3'- -CGCCUAgCUUCG-----------CGAGgCAA-UUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 153610 | 0.66 | 0.999544 |
Target: 5'- aGCGGG-CGGAGCGaCUUCGUc-AACGu -3' miRNA: 3'- -CGCCUaGCUUCGC-GAGGCAauUUGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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