miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14626 5' -59.4 NC_003521.1 + 181451 0.7 0.64683
Target:  5'- gUGCUGc-GCGGCguccagcggcugGCGCGCCGCcUGCa -3'
miRNA:   3'- -ACGACaaCGUCG------------UGCGCGGCGaGCGc -5'
14626 5' -59.4 NC_003521.1 + 110809 0.7 0.617427
Target:  5'- cGCUGaaagccaGCGGCcguuGCGCGCCGC-CGCc -3'
miRNA:   3'- aCGACaa-----CGUCG----UGCGCGGCGaGCGc -5'
14626 5' -59.4 NC_003521.1 + 109706 0.73 0.457084
Target:  5'- cGCUGUcccuucccgGCAGC-CGCGCCGCccCGCc -3'
miRNA:   3'- aCGACAa--------CGUCGuGCGCGGCGa-GCGc -5'
14626 5' -59.4 NC_003521.1 + 179462 0.74 0.405804
Target:  5'- aGCUGUUGCAGgaaGCGgGCCGUggGCa -3'
miRNA:   3'- aCGACAACGUCg--UGCgCGGCGagCGc -5'
14626 5' -59.4 NC_003521.1 + 122861 0.68 0.724213
Target:  5'- aGCgc-UGguGCugGcCGCCGC-CGCGa -3'
miRNA:   3'- aCGacaACguCGugC-GCGGCGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 21345 0.69 0.665415
Target:  5'- gUGCUGcu-CAGCGCGCugcuaugGUCGCUCGUGc -3'
miRNA:   3'- -ACGACaacGUCGUGCG-------CGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 167573 0.71 0.597865
Target:  5'- cGCagagGUUGCAGCGCGUGUCGauggagaGCGg -3'
miRNA:   3'- aCGa---CAACGUCGUGCGCGGCgag----CGC- -5'
14626 5' -59.4 NC_003521.1 + 181393 0.76 0.328855
Target:  5'- cGCUGccgGCGGCG-GCGCCGCugUCGCGu -3'
miRNA:   3'- aCGACaa-CGUCGUgCGCGGCG--AGCGC- -5'
14626 5' -59.4 NC_003521.1 + 36768 0.7 0.660531
Target:  5'- gUGCgacUGCGGCgacuggcagggccacGCGCugcggaGCCGCUCGCGg -3'
miRNA:   3'- -ACGacaACGUCG---------------UGCG------CGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 91000 0.78 0.242354
Target:  5'- cUGCUGUUGCAGCugcagcaggucggucACGgccgGCCGUUCGCGg -3'
miRNA:   3'- -ACGACAACGUCG---------------UGCg---CGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 116363 0.7 0.617427
Target:  5'- aGCgcg-GCGGCgaacGCGUGCCGC-CGCGg -3'
miRNA:   3'- aCGacaaCGUCG----UGCGCGGCGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 175230 0.7 0.656619
Target:  5'- cUGCUGUUGCAGCuguUGCuGUCcCUgGCGg -3'
miRNA:   3'- -ACGACAACGUCGu--GCG-CGGcGAgCGC- -5'
14626 5' -59.4 NC_003521.1 + 103124 0.71 0.568709
Target:  5'- aGCUGgcGCAGCGCGCGgCGgUgcUGCa -3'
miRNA:   3'- aCGACaaCGUCGUGCGCgGCgA--GCGc -5'
14626 5' -59.4 NC_003521.1 + 117385 0.73 0.457084
Target:  5'- gUGCaGgUGCGGCACGCGCUguGCUgGCa -3'
miRNA:   3'- -ACGaCaACGUCGUGCGCGG--CGAgCGc -5'
14626 5' -59.4 NC_003521.1 + 198019 0.73 0.439597
Target:  5'- uUGCcGUUGCGGCGCGUGCaGC-CGCc -3'
miRNA:   3'- -ACGaCAACGUCGUGCGCGgCGaGCGc -5'
14626 5' -59.4 NC_003521.1 + 198753 0.74 0.414098
Target:  5'- uUGCcGUgcucGCuGguCGCGCCGCUCGUGg -3'
miRNA:   3'- -ACGaCAa---CGuCguGCGCGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 98025 0.68 0.731762
Target:  5'- gGCUGUUGCcaccaccgccguuGGUggcaccgACGaCGCCGC-CGCGg -3'
miRNA:   3'- aCGACAACG-------------UCG-------UGC-GCGGCGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 86114 0.68 0.724213
Target:  5'- cGCUGgauggUGUucuccucGCGCGCGUCGCacaCGCGg -3'
miRNA:   3'- aCGACa----ACGu------CGUGCGCGGCGa--GCGC- -5'
14626 5' -59.4 NC_003521.1 + 205187 0.69 0.704184
Target:  5'- cGCUc--GCAGCGCGUGCgggaccugcgaaaCGCUCGCc -3'
miRNA:   3'- aCGAcaaCGUCGUGCGCG-------------GCGAGCGc -5'
14626 5' -59.4 NC_003521.1 + 183651 0.69 0.666391
Target:  5'- cGCUucGUgcUGCGGCACGCcgacgaccuGCCGCgCGUGg -3'
miRNA:   3'- aCGA--CA--ACGUCGUGCG---------CGGCGaGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.