miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14626 5' -59.4 NC_003521.1 + 174668 0.78 0.229213
Target:  5'- -uCUGUUGCuGCGCGCGCUGCgggUGCGa -3'
miRNA:   3'- acGACAACGuCGUGCGCGGCGa--GCGC- -5'
14626 5' -59.4 NC_003521.1 + 167573 0.71 0.597865
Target:  5'- cGCagagGUUGCAGCGCGUGUCGauggagaGCGg -3'
miRNA:   3'- aCGa---CAACGUCGUGCGCGGCgag----CGC- -5'
14626 5' -59.4 NC_003521.1 + 110809 0.7 0.617427
Target:  5'- cGCUGaaagccaGCGGCcguuGCGCGCCGC-CGCc -3'
miRNA:   3'- aCGACaa-----CGUCG----UGCGCGGCGaGCGc -5'
14626 5' -59.4 NC_003521.1 + 35820 0.66 0.860234
Target:  5'- gGCgagaaccugGCGGUGCGCGCCGaggauguagaguucaUCGCGg -3'
miRNA:   3'- aCGacaa-----CGUCGUGCGCGGCg--------------AGCGC- -5'
14626 5' -59.4 NC_003521.1 + 198753 0.74 0.414098
Target:  5'- uUGCcGUgcucGCuGguCGCGCCGCUCGUGg -3'
miRNA:   3'- -ACGaCAa---CGuCguGCGCGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 77085 0.74 0.430997
Target:  5'- cGCUGUUGCcGC-CgGCGCCGCUCa-- -3'
miRNA:   3'- aCGACAACGuCGuG-CGCGGCGAGcgc -5'
14626 5' -59.4 NC_003521.1 + 198019 0.73 0.439597
Target:  5'- uUGCcGUUGCGGCGCGUGCaGC-CGCc -3'
miRNA:   3'- -ACGaCAACGUCGUGCGCGgCGaGCGc -5'
14626 5' -59.4 NC_003521.1 + 36399 0.73 0.448293
Target:  5'- cUGCUGgcgGCAGCGCGgGgCGUggauuUCGCGg -3'
miRNA:   3'- -ACGACaa-CGUCGUGCgCgGCG-----AGCGC- -5'
14626 5' -59.4 NC_003521.1 + 117385 0.73 0.457084
Target:  5'- gUGCaGgUGCGGCACGCGCUguGCUgGCa -3'
miRNA:   3'- -ACGaCaACGUCGUGCGCGG--CGAgCGc -5'
14626 5' -59.4 NC_003521.1 + 176940 0.71 0.588115
Target:  5'- -aCUGcUGCAGCucccgGCGCGCCGcCUCGUc -3'
miRNA:   3'- acGACaACGUCG-----UGCGCGGC-GAGCGc -5'
14626 5' -59.4 NC_003521.1 + 166127 0.71 0.567743
Target:  5'- cGCUGccGCGGCGcCGCcgucgcuGCUGCUUGCGg -3'
miRNA:   3'- aCGACaaCGUCGU-GCG-------CGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 109706 0.73 0.457084
Target:  5'- cGCUGUcccuucccgGCAGC-CGCGCCGCccCGCc -3'
miRNA:   3'- aCGACAa--------CGUCGuGCGCGGCGa-GCGc -5'
14626 5' -59.4 NC_003521.1 + 91000 0.78 0.242354
Target:  5'- cUGCUGUUGCAGCugcagcaggucggucACGgccgGCCGUUCGCGg -3'
miRNA:   3'- -ACGACAACGUCG---------------UGCg---CGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 103124 0.71 0.568709
Target:  5'- aGCUGgcGCAGCGCGCGgCGgUgcUGCa -3'
miRNA:   3'- aCGACaaCGUCGUGCGCgGCgA--GCGc -5'
14626 5' -59.4 NC_003521.1 + 181393 0.76 0.328855
Target:  5'- cGCUGccgGCGGCG-GCGCCGCugUCGCGu -3'
miRNA:   3'- aCGACaa-CGUCGUgCGCGGCG--AGCGC- -5'
14626 5' -59.4 NC_003521.1 + 166211 0.73 0.448293
Target:  5'- cGCUGUUggcgcgGCGGCgagGCGCGCCGgC-CGCGg -3'
miRNA:   3'- aCGACAA------CGUCG---UGCGCGGC-GaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 183906 0.71 0.578394
Target:  5'- gUGCUGgagGCGGUGCuGCGgCGCugUCGCGa -3'
miRNA:   3'- -ACGACaa-CGUCGUG-CGCgGCG--AGCGC- -5'
14626 5' -59.4 NC_003521.1 + 116363 0.7 0.617427
Target:  5'- aGCgcg-GCGGCgaacGCGUGCCGC-CGCGg -3'
miRNA:   3'- aCGacaaCGUCG----UGCGCGGCGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 179462 0.74 0.405804
Target:  5'- aGCUGUUGCAGgaaGCGgGCCGUggGCa -3'
miRNA:   3'- aCGACAACGUCg--UGCgCGGCGagCGc -5'
14626 5' -59.4 NC_003521.1 + 99243 0.74 0.430997
Target:  5'- aGCUGacGguGCGCGCGUCGUcgCGCGc -3'
miRNA:   3'- aCGACaaCguCGUGCGCGGCGa-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.