Results 1 - 20 of 179 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14627 | 5' | -49.5 | NC_003521.1 | + | 185546 | 0.66 | 0.9998 |
Target: 5'- uGACGGAGcCACCAag---GGCAGUCUg -3' miRNA: 3'- -CUGCCUU-GUGGUagaaaUUGUCGGGg -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 194373 | 0.66 | 0.9998 |
Target: 5'- cGACGaGGCcgACCAgcccccGCAGCCCCg -3' miRNA: 3'- -CUGCcUUG--UGGUagaaauUGUCGGGG- -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 148639 | 0.66 | 0.9998 |
Target: 5'- gGAgGGGAgGCCAg----GGCAucGCCCCg -3' miRNA: 3'- -CUgCCUUgUGGUagaaaUUGU--CGGGG- -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 160545 | 0.66 | 0.9998 |
Target: 5'- -uCGGAcGCGCCGUCgucuucgAACcaAGCUCCg -3' miRNA: 3'- cuGCCU-UGUGGUAGaaa----UUG--UCGGGG- -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 149579 | 0.66 | 0.9998 |
Target: 5'- gGACGGGACcCCG------AgGGCCCCa -3' miRNA: 3'- -CUGCCUUGuGGUagaaauUgUCGGGG- -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 140825 | 0.66 | 0.9998 |
Target: 5'- -gUGGAGaagaucuuCGCCGUCUUcAACAcGCCCa -3' miRNA: 3'- cuGCCUU--------GUGGUAGAAaUUGU-CGGGg -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 17426 | 0.66 | 0.9998 |
Target: 5'- -cCGGGGCGCCAc-----ACGGCCCg -3' miRNA: 3'- cuGCCUUGUGGUagaaauUGUCGGGg -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 67040 | 0.66 | 0.9998 |
Target: 5'- uGACGGuguccGugGCCAUCgc--GCAGaCCCUc -3' miRNA: 3'- -CUGCC-----UugUGGUAGaaauUGUC-GGGG- -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 72736 | 0.66 | 0.9998 |
Target: 5'- -uCGGucuuCGCCGaccUCU---GCAGCCCCc -3' miRNA: 3'- cuGCCuu--GUGGU---AGAaauUGUCGGGG- -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 62215 | 0.66 | 0.9998 |
Target: 5'- aGGCGuuGGACGCCGUgCUgcagGAgGGCgCCCg -3' miRNA: 3'- -CUGC--CUUGUGGUA-GAaa--UUgUCG-GGG- -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 26002 | 0.66 | 0.99979 |
Target: 5'- cAUGGAAcCGCCGUCgccgcgccCGGCgCCCg -3' miRNA: 3'- cUGCCUU-GUGGUAGaaauu---GUCG-GGG- -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 109604 | 0.66 | 0.999746 |
Target: 5'- -uCGcGACGCUGUCUcUGGCgccGGCCCCu -3' miRNA: 3'- cuGCcUUGUGGUAGAaAUUG---UCGGGG- -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 139763 | 0.66 | 0.999746 |
Target: 5'- cGACGGcagGAUccgGCCGUCg---GCGGCCgCCa -3' miRNA: 3'- -CUGCC---UUG---UGGUAGaaauUGUCGG-GG- -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 128770 | 0.66 | 0.999746 |
Target: 5'- gGugGGGuucuccaggAUGCUGUCggUGGCGGCCuCCa -3' miRNA: 3'- -CugCCU---------UGUGGUAGaaAUUGUCGG-GG- -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 130658 | 0.66 | 0.999746 |
Target: 5'- -cUGGAuaugaGCGCCAUCa-UGGCGGCCUUc -3' miRNA: 3'- cuGCCU-----UGUGGUAGaaAUUGUCGGGG- -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 166242 | 0.66 | 0.999746 |
Target: 5'- cGCGGGACGCCG-Cgcc-GCcGCUCCg -3' miRNA: 3'- cUGCCUUGUGGUaGaaauUGuCGGGG- -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 226904 | 0.66 | 0.999746 |
Target: 5'- cGGCGGccAGCGCgGcCUcc-GCGGCCCCc -3' miRNA: 3'- -CUGCC--UUGUGgUaGAaauUGUCGGGG- -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 25549 | 0.66 | 0.999746 |
Target: 5'- cGACGGcgGACGCUGUUgugcaGGCGGCCgCg -3' miRNA: 3'- -CUGCC--UUGUGGUAGaaa--UUGUCGGgG- -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 5702 | 0.66 | 0.999746 |
Target: 5'- aACGG-GCGCCGUCaccggggUUAuguguACGGCCCg -3' miRNA: 3'- cUGCCuUGUGGUAGa------AAU-----UGUCGGGg -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 57415 | 0.66 | 0.999746 |
Target: 5'- uGCGGucgccCACCGUCUcgcgGACGgGCUCCu -3' miRNA: 3'- cUGCCuu---GUGGUAGAaa--UUGU-CGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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