miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14627 5' -49.5 NC_003521.1 + 194373 0.66 0.9998
Target:  5'- cGACGaGGCcgACCAgcccccGCAGCCCCg -3'
miRNA:   3'- -CUGCcUUG--UGGUagaaauUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 148639 0.66 0.9998
Target:  5'- gGAgGGGAgGCCAg----GGCAucGCCCCg -3'
miRNA:   3'- -CUgCCUUgUGGUagaaaUUGU--CGGGG- -5'
14627 5' -49.5 NC_003521.1 + 160545 0.66 0.9998
Target:  5'- -uCGGAcGCGCCGUCgucuucgAACcaAGCUCCg -3'
miRNA:   3'- cuGCCU-UGUGGUAGaaa----UUG--UCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 149579 0.66 0.9998
Target:  5'- gGACGGGACcCCG------AgGGCCCCa -3'
miRNA:   3'- -CUGCCUUGuGGUagaaauUgUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 140825 0.66 0.9998
Target:  5'- -gUGGAGaagaucuuCGCCGUCUUcAACAcGCCCa -3'
miRNA:   3'- cuGCCUU--------GUGGUAGAAaUUGU-CGGGg -5'
14627 5' -49.5 NC_003521.1 + 17426 0.66 0.9998
Target:  5'- -cCGGGGCGCCAc-----ACGGCCCg -3'
miRNA:   3'- cuGCCUUGUGGUagaaauUGUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 185546 0.66 0.9998
Target:  5'- uGACGGAGcCACCAag---GGCAGUCUg -3'
miRNA:   3'- -CUGCCUU-GUGGUagaaaUUGUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 67040 0.66 0.9998
Target:  5'- uGACGGuguccGugGCCAUCgc--GCAGaCCCUc -3'
miRNA:   3'- -CUGCC-----UugUGGUAGaaauUGUC-GGGG- -5'
14627 5' -49.5 NC_003521.1 + 72736 0.66 0.9998
Target:  5'- -uCGGucuuCGCCGaccUCU---GCAGCCCCc -3'
miRNA:   3'- cuGCCuu--GUGGU---AGAaauUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 62215 0.66 0.9998
Target:  5'- aGGCGuuGGACGCCGUgCUgcagGAgGGCgCCCg -3'
miRNA:   3'- -CUGC--CUUGUGGUA-GAaa--UUgUCG-GGG- -5'
14627 5' -49.5 NC_003521.1 + 26002 0.66 0.99979
Target:  5'- cAUGGAAcCGCCGUCgccgcgccCGGCgCCCg -3'
miRNA:   3'- cUGCCUU-GUGGUAGaaauu---GUCG-GGG- -5'
14627 5' -49.5 NC_003521.1 + 57415 0.66 0.999746
Target:  5'- uGCGGucgccCACCGUCUcgcgGACGgGCUCCu -3'
miRNA:   3'- cUGCCuu---GUGGUAGAaa--UUGU-CGGGG- -5'
14627 5' -49.5 NC_003521.1 + 5702 0.66 0.999746
Target:  5'- aACGG-GCGCCGUCaccggggUUAuguguACGGCCCg -3'
miRNA:   3'- cUGCCuUGUGGUAGa------AAU-----UGUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 25549 0.66 0.999746
Target:  5'- cGACGGcgGACGCUGUUgugcaGGCGGCCgCg -3'
miRNA:   3'- -CUGCC--UUGUGGUAGaaa--UUGUCGGgG- -5'
14627 5' -49.5 NC_003521.1 + 226904 0.66 0.999746
Target:  5'- cGGCGGccAGCGCgGcCUcc-GCGGCCCCc -3'
miRNA:   3'- -CUGCC--UUGUGgUaGAaauUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 130658 0.66 0.999746
Target:  5'- -cUGGAuaugaGCGCCAUCa-UGGCGGCCUUc -3'
miRNA:   3'- cuGCCU-----UGUGGUAGaaAUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 139763 0.66 0.999746
Target:  5'- cGACGGcagGAUccgGCCGUCg---GCGGCCgCCa -3'
miRNA:   3'- -CUGCC---UUG---UGGUAGaaauUGUCGG-GG- -5'
14627 5' -49.5 NC_003521.1 + 109604 0.66 0.999746
Target:  5'- -uCGcGACGCUGUCUcUGGCgccGGCCCCu -3'
miRNA:   3'- cuGCcUUGUGGUAGAaAUUG---UCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 166242 0.66 0.999746
Target:  5'- cGCGGGACGCCG-Cgcc-GCcGCUCCg -3'
miRNA:   3'- cUGCCUUGUGGUaGaaauUGuCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 128770 0.66 0.999746
Target:  5'- gGugGGGuucuccaggAUGCUGUCggUGGCGGCCuCCa -3'
miRNA:   3'- -CugCCU---------UGUGGUAGaaAUUGUCGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.