miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14628 3' -56.4 NC_003521.1 + 138328 0.66 0.942106
Target:  5'- uGgAcCUGCGGCUGCgcgacggcgucucggGCcucucuaagcacACGGUCUUCg -3'
miRNA:   3'- gCgU-GACGUCGACGa--------------CG------------UGCCAGAAG- -5'
14628 3' -56.4 NC_003521.1 + 109491 0.66 0.941654
Target:  5'- gGCACgggGCgaAGC-GCUGCACGGcCa-- -3'
miRNA:   3'- gCGUGa--CG--UCGaCGACGUGCCaGaag -5'
14628 3' -56.4 NC_003521.1 + 105617 0.66 0.941654
Target:  5'- gGCGCUGCAGCaggGCgUGCuCGGg---- -3'
miRNA:   3'- gCGUGACGUCGa--CG-ACGuGCCagaag -5'
14628 3' -56.4 NC_003521.1 + 141208 0.66 0.941199
Target:  5'- gGCGCUGCgccgccgGGC-GCUGCA-GGUCa-- -3'
miRNA:   3'- gCGUGACG-------UCGaCGACGUgCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 38998 0.66 0.937
Target:  5'- gGCGCUGguGgauguggcGCUGCACGGcCgUCa -3'
miRNA:   3'- gCGUGACguCga------CGACGUGCCaGaAG- -5'
14628 3' -56.4 NC_003521.1 + 26249 0.66 0.937
Target:  5'- gCGCACggaacGCcagcGCUGCUGCAccaccaggcacCGGUCUc- -3'
miRNA:   3'- -GCGUGa----CGu---CGACGACGU-----------GCCAGAag -5'
14628 3' -56.4 NC_003521.1 + 239226 0.66 0.937
Target:  5'- gGCGCUGguGgauguggcGCUGCACGGcCgUCa -3'
miRNA:   3'- gCGUGACguCga------CGACGUGCCaGaAG- -5'
14628 3' -56.4 NC_003521.1 + 104768 0.66 0.937
Target:  5'- aGCGC-GCAGCcGCUGCccaGGUCc-- -3'
miRNA:   3'- gCGUGaCGUCGaCGACGug-CCAGaag -5'
14628 3' -56.4 NC_003521.1 + 101772 0.66 0.932117
Target:  5'- gGUGgUGCAGCagGUUGCGCaGGUCa-- -3'
miRNA:   3'- gCGUgACGUCGa-CGACGUG-CCAGaag -5'
14628 3' -56.4 NC_003521.1 + 144748 0.66 0.932117
Target:  5'- aCGaggaGCUGaccCGGCUGCUG-GCGGUCUg- -3'
miRNA:   3'- -GCg---UGAC---GUCGACGACgUGCCAGAag -5'
14628 3' -56.4 NC_003521.1 + 175231 0.66 0.932117
Target:  5'- uGCugUuGCAGCUGUUGCugucccugGCGGUa--- -3'
miRNA:   3'- gCGugA-CGUCGACGACG--------UGCCAgaag -5'
14628 3' -56.4 NC_003521.1 + 55747 0.66 0.927002
Target:  5'- gCGCGCggGCGGCaGCgacagGCGCGGcCggCg -3'
miRNA:   3'- -GCGUGa-CGUCGaCGa----CGUGCCaGaaG- -5'
14628 3' -56.4 NC_003521.1 + 103267 0.66 0.927002
Target:  5'- uGCACUGCuGCUcgGCcgGCGCcGUCUcgUCg -3'
miRNA:   3'- gCGUGACGuCGA--CGa-CGUGcCAGA--AG- -5'
14628 3' -56.4 NC_003521.1 + 144042 0.66 0.927002
Target:  5'- aGCGCcGCcGCUGCUGC-CGG-CggCg -3'
miRNA:   3'- gCGUGaCGuCGACGACGuGCCaGaaG- -5'
14628 3' -56.4 NC_003521.1 + 223779 0.66 0.921655
Target:  5'- gGCGCUGCuGgUGCUGC-CGuuGUCgUCg -3'
miRNA:   3'- gCGUGACGuCgACGACGuGC--CAGaAG- -5'
14628 3' -56.4 NC_003521.1 + 155101 0.66 0.921655
Target:  5'- gGCGCUGCAGgaGCaggGCGUGGaggaCUUCu -3'
miRNA:   3'- gCGUGACGUCgaCGa--CGUGCCa---GAAG- -5'
14628 3' -56.4 NC_003521.1 + 74338 0.67 0.916078
Target:  5'- gCGCcccGCUGgAuggcGCUGCUGCGCGG-CUa- -3'
miRNA:   3'- -GCG---UGACgU----CGACGACGUGCCaGAag -5'
14628 3' -56.4 NC_003521.1 + 150619 0.67 0.916078
Target:  5'- gGCugUugcgGCGGCUGCUGCGCaGG-Cg-- -3'
miRNA:   3'- gCGugA----CGUCGACGACGUG-CCaGaag -5'
14628 3' -56.4 NC_003521.1 + 76518 0.67 0.916078
Target:  5'- uGCuGCUGCuguuguuguGGCUGCUGCuGCGGUg--- -3'
miRNA:   3'- gCG-UGACG---------UCGACGACG-UGCCAgaag -5'
14628 3' -56.4 NC_003521.1 + 85236 0.67 0.915507
Target:  5'- uGCuGCUGCucucguuGCUGCUGCAccaccuccugcgcCGGUCg-- -3'
miRNA:   3'- gCG-UGACGu------CGACGACGU-------------GCCAGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.