miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14628 3' -56.4 NC_003521.1 + 76283 0.67 0.89797
Target:  5'- aGuCGCUGCcGCUGCUGCGaguccgGGUCc-- -3'
miRNA:   3'- gC-GUGACGuCGACGACGUg-----CCAGaag -5'
14628 3' -56.4 NC_003521.1 + 185107 0.68 0.863371
Target:  5'- gGCGCUGCGcgccgacauGCUGgaGCACGGg---- -3'
miRNA:   3'- gCGUGACGU---------CGACgaCGUGCCagaag -5'
14628 3' -56.4 NC_003521.1 + 74338 0.67 0.916078
Target:  5'- gCGCcccGCUGgAuggcGCUGCUGCGCGG-CUa- -3'
miRNA:   3'- -GCG---UGACgU----CGACGACGUGCCaGAag -5'
14628 3' -56.4 NC_003521.1 + 141284 0.68 0.863371
Target:  5'- gGCACcuaCcGCUGCgGCACGGUCUcCg -3'
miRNA:   3'- gCGUGac-GuCGACGaCGUGCCAGAaG- -5'
14628 3' -56.4 NC_003521.1 + 170086 0.68 0.870715
Target:  5'- gCGCGCUGCAGCUGgacgaagUGC-CGGUa--- -3'
miRNA:   3'- -GCGUGACGUCGACg------ACGuGCCAgaag -5'
14628 3' -56.4 NC_003521.1 + 6147 0.68 0.877851
Target:  5'- aCGUACUGCAGCcaaugcgccggcUccggcuccugGCUGUugGGUCcgUCg -3'
miRNA:   3'- -GCGUGACGUCG------------A----------CGACGugCCAGa-AG- -5'
14628 3' -56.4 NC_003521.1 + 38998 0.66 0.937
Target:  5'- gGCGCUGguGgauguggcGCUGCACGGcCgUCa -3'
miRNA:   3'- gCGUGACguCga------CGACGUGCCaGaAG- -5'
14628 3' -56.4 NC_003521.1 + 144042 0.66 0.927002
Target:  5'- aGCGCcGCcGCUGCUGC-CGG-CggCg -3'
miRNA:   3'- gCGUGaCGuCGACGACGuGCCaGaaG- -5'
14628 3' -56.4 NC_003521.1 + 223779 0.66 0.921655
Target:  5'- gGCGCUGCuGgUGCUGC-CGuuGUCgUCg -3'
miRNA:   3'- gCGUGACGuCgACGACGuGC--CAGaAG- -5'
14628 3' -56.4 NC_003521.1 + 138328 0.66 0.942106
Target:  5'- uGgAcCUGCGGCUGCgcgacggcgucucggGCcucucuaagcacACGGUCUUCg -3'
miRNA:   3'- gCgU-GACGUCGACGa--------------CG------------UGCCAGAAG- -5'
14628 3' -56.4 NC_003521.1 + 85236 0.67 0.915507
Target:  5'- uGCuGCUGCucucguuGCUGCUGCAccaccuccugcgcCGGUCg-- -3'
miRNA:   3'- gCG-UGACGu------CGACGACGU-------------GCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 153201 0.67 0.91262
Target:  5'- gGC-CUGCGGCggcaccUGCUGCcacaccugcuacaacACGGcCUUCg -3'
miRNA:   3'- gCGuGACGUCG------ACGACG---------------UGCCaGAAG- -5'
14628 3' -56.4 NC_003521.1 + 48011 0.67 0.904233
Target:  5'- gGCuuCUGCGGCUGCUGCcaGCGaUCc-- -3'
miRNA:   3'- gCGu-GACGUCGACGACG--UGCcAGaag -5'
14628 3' -56.4 NC_003521.1 + 21343 0.67 0.904233
Target:  5'- cCGUGCUGCucAGCgcGCUGCuAUGGUCg-- -3'
miRNA:   3'- -GCGUGACG--UCGa-CGACG-UGCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 19660 0.67 0.89797
Target:  5'- uGC-CUGgGGCUGCUGCGCuGGg---- -3'
miRNA:   3'- gCGuGACgUCGACGACGUG-CCagaag -5'
14628 3' -56.4 NC_003521.1 + 179600 0.67 0.891483
Target:  5'- uGCagGCUGCcgcuGCUGCUGCGCGugauGUCg-- -3'
miRNA:   3'- gCG--UGACGu---CGACGACGUGC----CAGaag -5'
14628 3' -56.4 NC_003521.1 + 104768 0.66 0.937
Target:  5'- aGCGC-GCAGCcGCUGCccaGGUCc-- -3'
miRNA:   3'- gCGUGaCGUCGaCGACGug-CCAGaag -5'
14628 3' -56.4 NC_003521.1 + 103267 0.66 0.927002
Target:  5'- uGCACUGCuGCUcgGCcgGCGCcGUCUcgUCg -3'
miRNA:   3'- gCGUGACGuCGA--CGa-CGUGcCAGA--AG- -5'
14628 3' -56.4 NC_003521.1 + 144748 0.66 0.932117
Target:  5'- aCGaggaGCUGaccCGGCUGCUG-GCGGUCUg- -3'
miRNA:   3'- -GCg---UGAC---GUCGACGACgUGCCAGAag -5'
14628 3' -56.4 NC_003521.1 + 235990 0.68 0.840153
Target:  5'- cCGCACUGCaAGC-GCguucGCACGGg--UCa -3'
miRNA:   3'- -GCGUGACG-UCGaCGa---CGUGCCagaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.