miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14628 5' -57 NC_003521.1 + 87601 0.66 0.935433
Target:  5'- -cGAagGCCGUGuuGUAGCa-GGUGUg -3'
miRNA:   3'- uaUUagUGGCACggCAUCGggCCGCA- -5'
14628 5' -57 NC_003521.1 + 100212 0.66 0.935433
Target:  5'- ----cCGCUGcagGUCGUAGgCCGGCGa -3'
miRNA:   3'- uauuaGUGGCa--CGGCAUCgGGCCGCa -5'
14628 5' -57 NC_003521.1 + 166462 0.66 0.935433
Target:  5'- --cGUCGCCGcacugGCCGUAGCCgCGcagcaGCGc -3'
miRNA:   3'- uauUAGUGGCa----CGGCAUCGG-GC-----CGCa -5'
14628 5' -57 NC_003521.1 + 117273 0.66 0.935433
Target:  5'- ----cCGCCGUcgucgGCCGUGGUgCCGGCu- -3'
miRNA:   3'- uauuaGUGGCA-----CGGCAUCG-GGCCGca -5'
14628 5' -57 NC_003521.1 + 239048 0.66 0.933986
Target:  5'- cUGGUCGCgGcGCCGUguuccgaggaagagAGCCUGGCu- -3'
miRNA:   3'- uAUUAGUGgCaCGGCA--------------UCGGGCCGca -5'
14628 5' -57 NC_003521.1 + 38821 0.66 0.933986
Target:  5'- cUGGUCGCgGcGCCGUguuccgaggaagagAGCCUGGCu- -3'
miRNA:   3'- uAUUAGUGgCaCGGCA--------------UCGGGCCGca -5'
14628 5' -57 NC_003521.1 + 109735 0.66 0.930532
Target:  5'- ----cCGCCGU-CCGgAGCCCGcGCGa -3'
miRNA:   3'- uauuaGUGGCAcGGCaUCGGGC-CGCa -5'
14628 5' -57 NC_003521.1 + 218315 0.66 0.930532
Target:  5'- ---cUCACCGcagaaacCCGUGGCCaCGGUGg -3'
miRNA:   3'- uauuAGUGGCac-----GGCAUCGG-GCCGCa -5'
14628 5' -57 NC_003521.1 + 126058 0.66 0.930532
Target:  5'- gAUGGUCuCCGUguccagcaGCUGUGGCCgcgccacccccaCGGCGUg -3'
miRNA:   3'- -UAUUAGuGGCA--------CGGCAUCGG------------GCCGCA- -5'
14628 5' -57 NC_003521.1 + 236304 0.66 0.929524
Target:  5'- cGUGAUCGCCGUuuuuCCGcuuacucaucggGGCCCGGaCGg -3'
miRNA:   3'- -UAUUAGUGGCAc---GGCa-----------UCGGGCC-GCa -5'
14628 5' -57 NC_003521.1 + 72631 0.66 0.925404
Target:  5'- --cAUCACCGUGCUGgcgGGCCa-GCa- -3'
miRNA:   3'- uauUAGUGGCACGGCa--UCGGgcCGca -5'
14628 5' -57 NC_003521.1 + 150820 0.66 0.925404
Target:  5'- ---uUCGCU---UCGUAGCCCGGCGc -3'
miRNA:   3'- uauuAGUGGcacGGCAUCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 43486 0.66 0.925404
Target:  5'- -----gGCCGUGCU--GGCCgCGGCGg -3'
miRNA:   3'- uauuagUGGCACGGcaUCGG-GCCGCa -5'
14628 5' -57 NC_003521.1 + 129446 0.66 0.925404
Target:  5'- --cGUCcccuCCGUcGCCGcUAGuCCCGGCGc -3'
miRNA:   3'- uauUAGu---GGCA-CGGC-AUC-GGGCCGCa -5'
14628 5' -57 NC_003521.1 + 105581 0.66 0.925404
Target:  5'- ----cCGCCGUGUCGUcGCcgccgCCGGCGc -3'
miRNA:   3'- uauuaGUGGCACGGCAuCG-----GGCCGCa -5'
14628 5' -57 NC_003521.1 + 13879 0.66 0.920051
Target:  5'- ----gCGCCGccauggauuucGCCGgggGGCCCGGCGc -3'
miRNA:   3'- uauuaGUGGCa----------CGGCa--UCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 23619 0.66 0.920051
Target:  5'- -cGAUCugCaccGCCGUGGCCUgccugGGCGg -3'
miRNA:   3'- uaUUAGugGca-CGGCAUCGGG-----CCGCa -5'
14628 5' -57 NC_003521.1 + 195008 0.66 0.920051
Target:  5'- ---uUCGCCGUGCCaGUGGCCUucGCc- -3'
miRNA:   3'- uauuAGUGGCACGG-CAUCGGGc-CGca -5'
14628 5' -57 NC_003521.1 + 94181 0.66 0.914471
Target:  5'- ---cUCGCCGUcGUCGUGGCCgGGg-- -3'
miRNA:   3'- uauuAGUGGCA-CGGCAUCGGgCCgca -5'
14628 5' -57 NC_003521.1 + 217513 0.66 0.914471
Target:  5'- cAUGGcCACgGUGCUGUAGaCCC-GCGUg -3'
miRNA:   3'- -UAUUaGUGgCACGGCAUC-GGGcCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.