Results 1 - 20 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14628 | 5' | -57 | NC_003521.1 | + | 87601 | 0.66 | 0.935433 |
Target: 5'- -cGAagGCCGUGuuGUAGCa-GGUGUg -3' miRNA: 3'- uaUUagUGGCACggCAUCGggCCGCA- -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 100212 | 0.66 | 0.935433 |
Target: 5'- ----cCGCUGcagGUCGUAGgCCGGCGa -3' miRNA: 3'- uauuaGUGGCa--CGGCAUCgGGCCGCa -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 117273 | 0.66 | 0.935433 |
Target: 5'- ----cCGCCGUcgucgGCCGUGGUgCCGGCu- -3' miRNA: 3'- uauuaGUGGCA-----CGGCAUCG-GGCCGca -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 166462 | 0.66 | 0.935433 |
Target: 5'- --cGUCGCCGcacugGCCGUAGCCgCGcagcaGCGc -3' miRNA: 3'- uauUAGUGGCa----CGGCAUCGG-GC-----CGCa -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 38821 | 0.66 | 0.933986 |
Target: 5'- cUGGUCGCgGcGCCGUguuccgaggaagagAGCCUGGCu- -3' miRNA: 3'- uAUUAGUGgCaCGGCA--------------UCGGGCCGca -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 239048 | 0.66 | 0.933986 |
Target: 5'- cUGGUCGCgGcGCCGUguuccgaggaagagAGCCUGGCu- -3' miRNA: 3'- uAUUAGUGgCaCGGCA--------------UCGGGCCGca -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 109735 | 0.66 | 0.930532 |
Target: 5'- ----cCGCCGU-CCGgAGCCCGcGCGa -3' miRNA: 3'- uauuaGUGGCAcGGCaUCGGGC-CGCa -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 126058 | 0.66 | 0.930532 |
Target: 5'- gAUGGUCuCCGUguccagcaGCUGUGGCCgcgccacccccaCGGCGUg -3' miRNA: 3'- -UAUUAGuGGCA--------CGGCAUCGG------------GCCGCA- -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 218315 | 0.66 | 0.930532 |
Target: 5'- ---cUCACCGcagaaacCCGUGGCCaCGGUGg -3' miRNA: 3'- uauuAGUGGCac-----GGCAUCGG-GCCGCa -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 236304 | 0.66 | 0.929524 |
Target: 5'- cGUGAUCGCCGUuuuuCCGcuuacucaucggGGCCCGGaCGg -3' miRNA: 3'- -UAUUAGUGGCAc---GGCa-----------UCGGGCC-GCa -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 105581 | 0.66 | 0.925404 |
Target: 5'- ----cCGCCGUGUCGUcGCcgccgCCGGCGc -3' miRNA: 3'- uauuaGUGGCACGGCAuCG-----GGCCGCa -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 72631 | 0.66 | 0.925404 |
Target: 5'- --cAUCACCGUGCUGgcgGGCCa-GCa- -3' miRNA: 3'- uauUAGUGGCACGGCa--UCGGgcCGca -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 43486 | 0.66 | 0.925404 |
Target: 5'- -----gGCCGUGCU--GGCCgCGGCGg -3' miRNA: 3'- uauuagUGGCACGGcaUCGG-GCCGCa -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 150820 | 0.66 | 0.925404 |
Target: 5'- ---uUCGCU---UCGUAGCCCGGCGc -3' miRNA: 3'- uauuAGUGGcacGGCAUCGGGCCGCa -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 129446 | 0.66 | 0.925404 |
Target: 5'- --cGUCcccuCCGUcGCCGcUAGuCCCGGCGc -3' miRNA: 3'- uauUAGu---GGCA-CGGC-AUC-GGGCCGCa -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 23619 | 0.66 | 0.920051 |
Target: 5'- -cGAUCugCaccGCCGUGGCCUgccugGGCGg -3' miRNA: 3'- uaUUAGugGca-CGGCAUCGGG-----CCGCa -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 195008 | 0.66 | 0.920051 |
Target: 5'- ---uUCGCCGUGCCaGUGGCCUucGCc- -3' miRNA: 3'- uauuAGUGGCACGG-CAUCGGGc-CGca -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 13879 | 0.66 | 0.920051 |
Target: 5'- ----gCGCCGccauggauuucGCCGgggGGCCCGGCGc -3' miRNA: 3'- uauuaGUGGCa----------CGGCa--UCGGGCCGCa -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 94181 | 0.66 | 0.914471 |
Target: 5'- ---cUCGCCGUcGUCGUGGCCgGGg-- -3' miRNA: 3'- uauuAGUGGCA-CGGCAUCGGgCCgca -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 217513 | 0.66 | 0.914471 |
Target: 5'- cAUGGcCACgGUGCUGUAGaCCC-GCGUg -3' miRNA: 3'- -UAUUaGUGgCACGGCAUC-GGGcCGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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