Results 1 - 20 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14629 | 3' | -56.7 | NC_003521.1 | + | 13176 | 0.66 | 0.956389 |
Target: 5'- --aGGCgGGuCCUgaccaGGCGUgccgcUCGGGCCGCc -3' miRNA: 3'- cucUUGgCC-GGA-----UCGCA-----AGCCUGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 77969 | 0.66 | 0.956389 |
Target: 5'- uGGAGCCGGCCg------CGGGCuCGCc -3' miRNA: 3'- cUCUUGGCCGGaucgcaaGCCUG-GCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 103222 | 0.66 | 0.956389 |
Target: 5'- uGAGGucGCCGGCCaGGCGg-CGGcCCa- -3' miRNA: 3'- -CUCU--UGGCCGGaUCGCaaGCCuGGcg -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 229216 | 0.66 | 0.956023 |
Target: 5'- uGAGAuugcgauACCcGCC-AGUGgacccgCGGGCCGCg -3' miRNA: 3'- -CUCU-------UGGcCGGaUCGCaa----GCCUGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 141794 | 0.66 | 0.952634 |
Target: 5'- -cGGACCGGCCcggagccGGCGccaUCGucuacaagacGACCGCg -3' miRNA: 3'- cuCUUGGCCGGa------UCGCa--AGC----------CUGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 129663 | 0.66 | 0.952634 |
Target: 5'- -cGGGgCGGCCgcGCuaugCGGACCGUc -3' miRNA: 3'- cuCUUgGCCGGauCGcaa-GCCUGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 210015 | 0.66 | 0.952634 |
Target: 5'- cGGGuuucGCCGGCg-GGCccUCGGugCGCu -3' miRNA: 3'- -CUCu---UGGCCGgaUCGcaAGCCugGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 208595 | 0.66 | 0.952634 |
Target: 5'- -cGAGUgGGaCCUGGcCGUcUGGGCCGCg -3' miRNA: 3'- cuCUUGgCC-GGAUC-GCAaGCCUGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 121139 | 0.66 | 0.948667 |
Target: 5'- uGGAGCU-GCUgucGUGcUCGGACCGCa -3' miRNA: 3'- cUCUUGGcCGGau-CGCaAGCCUGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 165259 | 0.66 | 0.948667 |
Target: 5'- cGAGGACaggagGGCgCUGGCGUagccgccgcCGGcGCCGCu -3' miRNA: 3'- -CUCUUGg----CCG-GAUCGCAa--------GCC-UGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 66812 | 0.66 | 0.948259 |
Target: 5'- cAGGACCGGCUgaAGCGUaugugcuUCaGccGCCGCg -3' miRNA: 3'- cUCUUGGCCGGa-UCGCA-------AGcC--UGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 28304 | 0.66 | 0.947435 |
Target: 5'- cGAGAGcagcggcagcgaccCCGGCgcGGCcugCGGACCGCc -3' miRNA: 3'- -CUCUU--------------GGCCGgaUCGcaaGCCUGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 20206 | 0.66 | 0.946184 |
Target: 5'- cGGGAACucgCGcGCUUGuguauaagaguuagcGCGUUCGGACgGCu -3' miRNA: 3'- -CUCUUG---GC-CGGAU---------------CGCAAGCCUGgCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 217606 | 0.66 | 0.944486 |
Target: 5'- -cGGACCaGCaggGGCGUcUCGG-CCGCc -3' miRNA: 3'- cuCUUGGcCGga-UCGCA-AGCCuGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 153494 | 0.66 | 0.944486 |
Target: 5'- -cGGGCCGucuggucagcGCC-AGCGU--GGACCGCa -3' miRNA: 3'- cuCUUGGC----------CGGaUCGCAagCCUGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 102839 | 0.66 | 0.940088 |
Target: 5'- cGAGAAgCGcGCCagggcgcccgUGGCGUaggUCuGGGCCGUg -3' miRNA: 3'- -CUCUUgGC-CGG----------AUCGCA---AG-CCUGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 226753 | 0.66 | 0.940088 |
Target: 5'- uGAGcaagcaauCCGGCU--GCGgaCGGACCGUa -3' miRNA: 3'- -CUCuu------GGCCGGauCGCaaGCCUGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 169336 | 0.66 | 0.940088 |
Target: 5'- --cGGCCGGCgUGGU-UUCGGGuuGCg -3' miRNA: 3'- cucUUGGCCGgAUCGcAAGCCUggCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 36769 | 0.67 | 0.935472 |
Target: 5'- aAGGACgcgcgUGGCCUGGCGggcguggaGGACgCGCc -3' miRNA: 3'- cUCUUG-----GCCGGAUCGCaag-----CCUG-GCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 159640 | 0.67 | 0.935472 |
Target: 5'- cAGAucGCCgaGGCCUGGUGcgUGGACCa- -3' miRNA: 3'- cUCU--UGG--CCGGAUCGCaaGCCUGGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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