miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14629 3' -56.7 NC_003521.1 + 103222 0.66 0.956389
Target:  5'- uGAGGucGCCGGCCaGGCGg-CGGcCCa- -3'
miRNA:   3'- -CUCU--UGGCCGGaUCGCaaGCCuGGcg -5'
14629 3' -56.7 NC_003521.1 + 13176 0.66 0.956389
Target:  5'- --aGGCgGGuCCUgaccaGGCGUgccgcUCGGGCCGCc -3'
miRNA:   3'- cucUUGgCC-GGA-----UCGCA-----AGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 77969 0.66 0.956389
Target:  5'- uGGAGCCGGCCg------CGGGCuCGCc -3'
miRNA:   3'- cUCUUGGCCGGaucgcaaGCCUG-GCG- -5'
14629 3' -56.7 NC_003521.1 + 229216 0.66 0.956023
Target:  5'- uGAGAuugcgauACCcGCC-AGUGgacccgCGGGCCGCg -3'
miRNA:   3'- -CUCU-------UGGcCGGaUCGCaa----GCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 210015 0.66 0.952634
Target:  5'- cGGGuuucGCCGGCg-GGCccUCGGugCGCu -3'
miRNA:   3'- -CUCu---UGGCCGgaUCGcaAGCCugGCG- -5'
14629 3' -56.7 NC_003521.1 + 129663 0.66 0.952634
Target:  5'- -cGGGgCGGCCgcGCuaugCGGACCGUc -3'
miRNA:   3'- cuCUUgGCCGGauCGcaa-GCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 141794 0.66 0.952634
Target:  5'- -cGGACCGGCCcggagccGGCGccaUCGucuacaagacGACCGCg -3'
miRNA:   3'- cuCUUGGCCGGa------UCGCa--AGC----------CUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 208595 0.66 0.952634
Target:  5'- -cGAGUgGGaCCUGGcCGUcUGGGCCGCg -3'
miRNA:   3'- cuCUUGgCC-GGAUC-GCAaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 121139 0.66 0.948667
Target:  5'- uGGAGCU-GCUgucGUGcUCGGACCGCa -3'
miRNA:   3'- cUCUUGGcCGGau-CGCaAGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 165259 0.66 0.948667
Target:  5'- cGAGGACaggagGGCgCUGGCGUagccgccgcCGGcGCCGCu -3'
miRNA:   3'- -CUCUUGg----CCG-GAUCGCAa--------GCC-UGGCG- -5'
14629 3' -56.7 NC_003521.1 + 66812 0.66 0.948259
Target:  5'- cAGGACCGGCUgaAGCGUaugugcuUCaGccGCCGCg -3'
miRNA:   3'- cUCUUGGCCGGa-UCGCA-------AGcC--UGGCG- -5'
14629 3' -56.7 NC_003521.1 + 28304 0.66 0.947435
Target:  5'- cGAGAGcagcggcagcgaccCCGGCgcGGCcugCGGACCGCc -3'
miRNA:   3'- -CUCUU--------------GGCCGgaUCGcaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 20206 0.66 0.946184
Target:  5'- cGGGAACucgCGcGCUUGuguauaagaguuagcGCGUUCGGACgGCu -3'
miRNA:   3'- -CUCUUG---GC-CGGAU---------------CGCAAGCCUGgCG- -5'
14629 3' -56.7 NC_003521.1 + 153494 0.66 0.944486
Target:  5'- -cGGGCCGucuggucagcGCC-AGCGU--GGACCGCa -3'
miRNA:   3'- cuCUUGGC----------CGGaUCGCAagCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 217606 0.66 0.944486
Target:  5'- -cGGACCaGCaggGGCGUcUCGG-CCGCc -3'
miRNA:   3'- cuCUUGGcCGga-UCGCA-AGCCuGGCG- -5'
14629 3' -56.7 NC_003521.1 + 102839 0.66 0.940088
Target:  5'- cGAGAAgCGcGCCagggcgcccgUGGCGUaggUCuGGGCCGUg -3'
miRNA:   3'- -CUCUUgGC-CGG----------AUCGCA---AG-CCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 169336 0.66 0.940088
Target:  5'- --cGGCCGGCgUGGU-UUCGGGuuGCg -3'
miRNA:   3'- cucUUGGCCGgAUCGcAAGCCUggCG- -5'
14629 3' -56.7 NC_003521.1 + 226753 0.66 0.940088
Target:  5'- uGAGcaagcaauCCGGCU--GCGgaCGGACCGUa -3'
miRNA:   3'- -CUCuu------GGCCGGauCGCaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 125011 0.67 0.935472
Target:  5'- uGAGccacCCGcGCCUgAGCGg-CGGACUGCu -3'
miRNA:   3'- -CUCuu--GGC-CGGA-UCGCaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 159640 0.67 0.935472
Target:  5'- cAGAucGCCgaGGCCUGGUGcgUGGACCa- -3'
miRNA:   3'- cUCU--UGG--CCGGAUCGCaaGCCUGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.