miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14629 3' -56.7 NC_003521.1 + 18728 0.67 0.914804
Target:  5'- cGAGAcgcuGCCGGCgCU-GCaGggCGGGCUGUg -3'
miRNA:   3'- -CUCU----UGGCCG-GAuCG-CaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 193177 0.69 0.832561
Target:  5'- aGGAGCCGGCgggAGCGg-CGGAgCGUg -3'
miRNA:   3'- cUCUUGGCCGga-UCGCaaGCCUgGCG- -5'
14629 3' -56.7 NC_003521.1 + 36588 0.73 0.629431
Target:  5'- -cGAACUGGCCUGGCGg-CGGgugGCCGa -3'
miRNA:   3'- cuCUUGGCCGGAUCGCaaGCC---UGGCg -5'
14629 3' -56.7 NC_003521.1 + 38632 0.67 0.914804
Target:  5'- aGAGGcgcGCCGGCUgGGUGUcccgCGGGuCCGUu -3'
miRNA:   3'- -CUCU---UGGCCGGaUCGCAa---GCCU-GGCG- -5'
14629 3' -56.7 NC_003521.1 + 240607 0.73 0.628448
Target:  5'- cGGAACCGGUUUccgcggcGGCGUgcggCGGGCCGg -3'
miRNA:   3'- cUCUUGGCCGGA-------UCGCAa---GCCUGGCg -5'
14629 3' -56.7 NC_003521.1 + 141794 0.66 0.952634
Target:  5'- -cGGACCGGCCcggagccGGCGccaUCGucuacaagacGACCGCg -3'
miRNA:   3'- cuCUUGGCCGGa------UCGCa--AGC----------CUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 234592 0.71 0.726605
Target:  5'- cGGGAgcGCCGGUCUc-CaUUCGGACCGCc -3'
miRNA:   3'- -CUCU--UGGCCGGAucGcAAGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 129663 0.66 0.952634
Target:  5'- -cGGGgCGGCCgcGCuaugCGGACCGUc -3'
miRNA:   3'- cuCUUgGCCGGauCGcaa-GCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 121139 0.66 0.948667
Target:  5'- uGGAGCU-GCUgucGUGcUCGGACCGCa -3'
miRNA:   3'- cUCUUGGcCGGau-CGCaAGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 226753 0.66 0.940088
Target:  5'- uGAGcaagcaauCCGGCU--GCGgaCGGACCGUa -3'
miRNA:   3'- -CUCuu------GGCCGGauCGCaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 159640 0.67 0.935472
Target:  5'- cAGAucGCCgaGGCCUGGUGcgUGGACCa- -3'
miRNA:   3'- cUCU--UGG--CCGGAUCGCaaGCCUGGcg -5'
14629 3' -56.7 NC_003521.1 + 207983 0.67 0.925579
Target:  5'- cAGAcccuGCCGGUUUgcgacgucAGCGaguacgucuuUUCGGACCGCc -3'
miRNA:   3'- cUCU----UGGCCGGA--------UCGC----------AAGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 76845 0.67 0.925579
Target:  5'- cGGGAGaaGGCCcGGCGaccgccaucUUCGGcguCCGCg -3'
miRNA:   3'- -CUCUUggCCGGaUCGC---------AAGCCu--GGCG- -5'
14629 3' -56.7 NC_003521.1 + 107427 0.68 0.890641
Target:  5'- uGAGAGCCGacGCgaaAGCG--CGGACCGCc -3'
miRNA:   3'- -CUCUUGGC--CGga-UCGCaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 91817 0.68 0.88407
Target:  5'- uGGggUCGGUCUggaucuggacgGGCGUgaaGGugCGCg -3'
miRNA:   3'- cUCuuGGCCGGA-----------UCGCAag-CCugGCG- -5'
14629 3' -56.7 NC_003521.1 + 148439 0.69 0.863135
Target:  5'- aGGAGCCGGCggAGCGacggcagCGGGCgaGCg -3'
miRNA:   3'- cUCUUGGCCGgaUCGCaa-----GCCUGg-CG- -5'
14629 3' -56.7 NC_003521.1 + 117491 0.69 0.84821
Target:  5'- cGGcGCUggGGCCgucGGUGUUCGGACgGCu -3'
miRNA:   3'- cUCuUGG--CCGGa--UCGCAAGCCUGgCG- -5'
14629 3' -56.7 NC_003521.1 + 130751 0.7 0.824481
Target:  5'- uAGAGCUGGCCUucGgGUaCGGACUGa -3'
miRNA:   3'- cUCUUGGCCGGAu-CgCAaGCCUGGCg -5'
14629 3' -56.7 NC_003521.1 + 20639 0.7 0.81624
Target:  5'- gGAGAGCCGcGCgCUGGUGggCGccuacgugauGACCGUg -3'
miRNA:   3'- -CUCUUGGC-CG-GAUCGCaaGC----------CUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 39611 0.71 0.763816
Target:  5'- --cGGCCGGCCcAGCGggagCaGACCGCc -3'
miRNA:   3'- cucUUGGCCGGaUCGCaa--GcCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.