miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14629 3' -56.7 NC_003521.1 + 166615 0.69 0.832561
Target:  5'- cAGGACgUGGCagaagacGGCG-UCGGGCCGCg -3'
miRNA:   3'- cUCUUG-GCCGga-----UCGCaAGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 36500 0.7 0.81624
Target:  5'- aGGggUCGaCCaUGGCG-UCGGACUGCg -3'
miRNA:   3'- cUCuuGGCcGG-AUCGCaAGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 208945 0.73 0.629431
Target:  5'- -----gCGGCCUGGCGgugCGGuACCGCu -3'
miRNA:   3'- cucuugGCCGGAUCGCaa-GCC-UGGCG- -5'
14629 3' -56.7 NC_003521.1 + 213551 0.75 0.551406
Target:  5'- cGAG-ACCcGCCUGGCcUUCGuGGCCGCa -3'
miRNA:   3'- -CUCuUGGcCGGAUCGcAAGC-CUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 19958 0.68 0.890641
Target:  5'- uGAGGugGCCGGgCUGGCGgugaUCGuGACCu- -3'
miRNA:   3'- -CUCU--UGGCCgGAUCGCa---AGC-CUGGcg -5'
14629 3' -56.7 NC_003521.1 + 138380 0.69 0.84821
Target:  5'- cGAGAucuGCCgcGGCCUGcggcGCGUcUGGAUCGCc -3'
miRNA:   3'- -CUCU---UGG--CCGGAU----CGCAaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 196435 0.7 0.813738
Target:  5'- uGAGggUggaauaacgcaccuCGGCCUcgGGCGU--GGGCCGCa -3'
miRNA:   3'- -CUCuuG--------------GCCGGA--UCGCAagCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 188108 0.75 0.551406
Target:  5'- gGAGAccaACCGGgcucacuuUCUAGCGcgCGGACUGCa -3'
miRNA:   3'- -CUCU---UGGCC--------GGAUCGCaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 117491 0.69 0.84821
Target:  5'- cGGcGCUggGGCCgucGGUGUUCGGACgGCu -3'
miRNA:   3'- cUCuUGG--CCGGa--UCGCAAGCCUGgCG- -5'
14629 3' -56.7 NC_003521.1 + 196968 0.78 0.374835
Target:  5'- cGGGAGCCGGCCggGGCGccugugaCGGGcCCGCg -3'
miRNA:   3'- -CUCUUGGCCGGa-UCGCaa-----GCCU-GGCG- -5'
14629 3' -56.7 NC_003521.1 + 20639 0.7 0.81624
Target:  5'- gGAGAGCCGcGCgCUGGUGggCGccuacgugauGACCGUg -3'
miRNA:   3'- -CUCUUGGC-CG-GAUCGCaaGC----------CUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 169994 0.69 0.832561
Target:  5'- gGGGGACgcuuuccaugaGGCCUugcuGCGccucUUCGGGCCGCu -3'
miRNA:   3'- -CUCUUGg----------CCGGAu---CGC----AAGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 39611 0.71 0.763816
Target:  5'- --cGGCCGGCCcAGCGggagCaGACCGCc -3'
miRNA:   3'- cucUUGGCCGGaUCGCaa--GcCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 234592 0.71 0.726605
Target:  5'- cGGGAgcGCCGGUCUc-CaUUCGGACCGCc -3'
miRNA:   3'- -CUCU--UGGCCGGAucGcAAGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 58 0.73 0.628448
Target:  5'- cGGAACCGGUUUccgcggcGGCGUgcggCGGGCCGg -3'
miRNA:   3'- cUCUUGGCCGGA-------UCGCAa---GCCUGGCg -5'
14629 3' -56.7 NC_003521.1 + 187610 0.74 0.57072
Target:  5'- -uGGGCaCGGCCUgccgGGCGagcCGGGCCGCg -3'
miRNA:   3'- cuCUUG-GCCGGA----UCGCaa-GCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 116336 0.68 0.897004
Target:  5'- aAGAGCU-GCUgacGCGgaCGGACCGCg -3'
miRNA:   3'- cUCUUGGcCGGau-CGCaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 89120 0.68 0.890641
Target:  5'- cGAGGACCacgucuucaGCCUgaAGCugaCGGACCGCa -3'
miRNA:   3'- -CUCUUGGc--------CGGA--UCGcaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 198271 0.68 0.870312
Target:  5'- cGGAcaGCCaGCCgGGCGUcgcggaGGACCGCu -3'
miRNA:   3'- cUCU--UGGcCGGaUCGCAag----CCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 37483 0.69 0.855018
Target:  5'- -uGGACgCGGUCUgccccccGGCGUuuUCGGGcCCGCg -3'
miRNA:   3'- cuCUUG-GCCGGA-------UCGCA--AGCCU-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.