miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14629 3' -56.7 NC_003521.1 + 155483 0.83 0.214023
Target:  5'- aGAGAcGCCGGCCU-GCGg-CGGGCCGCg -3'
miRNA:   3'- -CUCU-UGGCCGGAuCGCaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 196435 0.7 0.813738
Target:  5'- uGAGggUggaauaacgcaccuCGGCCUcgGGCGU--GGGCCGCa -3'
miRNA:   3'- -CUCuuG--------------GCCGGA--UCGCAagCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 36500 0.7 0.81624
Target:  5'- aGGggUCGaCCaUGGCG-UCGGACUGCg -3'
miRNA:   3'- cUCuuGGCcGG-AUCGCaAGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 77969 0.66 0.956389
Target:  5'- uGGAGCCGGCCg------CGGGCuCGCc -3'
miRNA:   3'- cUCUUGGCCGGaucgcaaGCCUG-GCG- -5'
14629 3' -56.7 NC_003521.1 + 187610 0.74 0.57072
Target:  5'- -uGGGCaCGGCCUgccgGGCGagcCGGGCCGCg -3'
miRNA:   3'- cuCUUG-GCCGGA----UCGCaa-GCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 146777 0.74 0.599978
Target:  5'- uGGAACCGGCCUGGacaGaaggCGGGCCccgGCg -3'
miRNA:   3'- cUCUUGGCCGGAUCg--Caa--GCCUGG---CG- -5'
14629 3' -56.7 NC_003521.1 + 58 0.73 0.628448
Target:  5'- cGGAACCGGUUUccgcggcGGCGUgcggCGGGCCGg -3'
miRNA:   3'- cUCUUGGCCGGA-------UCGCAa---GCCUGGCg -5'
14629 3' -56.7 NC_003521.1 + 240607 0.73 0.628448
Target:  5'- cGGAACCGGUUUccgcggcGGCGUgcggCGGGCCGg -3'
miRNA:   3'- cUCUUGGCCGGA-------UCGCAa---GCCUGGCg -5'
14629 3' -56.7 NC_003521.1 + 234592 0.71 0.726605
Target:  5'- cGGGAgcGCCGGUCUc-CaUUCGGACCGCc -3'
miRNA:   3'- -CUCU--UGGCCGGAucGcAAGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 59731 0.7 0.790621
Target:  5'- -cGAcacGCCGGaUCUGGCcUUCGGGCCGg -3'
miRNA:   3'- cuCU---UGGCC-GGAUCGcAAGCCUGGCg -5'
14629 3' -56.7 NC_003521.1 + 212862 0.71 0.763816
Target:  5'- uGAGcGCC-GCCUGGCGUUUcuACCGCg -3'
miRNA:   3'- -CUCuUGGcCGGAUCGCAAGccUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 208945 0.73 0.629431
Target:  5'- -----gCGGCCUGGCGgugCGGuACCGCu -3'
miRNA:   3'- cucuugGCCGGAUCGCaa-GCC-UGGCG- -5'
14629 3' -56.7 NC_003521.1 + 196968 0.78 0.374835
Target:  5'- cGGGAGCCGGCCggGGCGccugugaCGGGcCCGCg -3'
miRNA:   3'- -CUCUUGGCCGGa-UCGCaa-----GCCU-GGCG- -5'
14629 3' -56.7 NC_003521.1 + 39611 0.71 0.763816
Target:  5'- --cGGCCGGCCcAGCGggagCaGACCGCc -3'
miRNA:   3'- cucUUGGCCGGaUCGCaa--GcCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 188108 0.75 0.551406
Target:  5'- gGAGAccaACCGGgcucacuuUCUAGCGcgCGGACUGCa -3'
miRNA:   3'- -CUCU---UGGCC--------GGAUCGCaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 36588 0.73 0.629431
Target:  5'- -cGAACUGGCCUGGCGg-CGGgugGCCGa -3'
miRNA:   3'- cuCUUGGCCGGAUCGCaaGCC---UGGCg -5'
14629 3' -56.7 NC_003521.1 + 14751 0.71 0.772869
Target:  5'- -cGGGCCGGCC--GCGgcCGGGgCGCg -3'
miRNA:   3'- cuCUUGGCCGGauCGCaaGCCUgGCG- -5'
14629 3' -56.7 NC_003521.1 + 20639 0.7 0.81624
Target:  5'- gGAGAGCCGcGCgCUGGUGggCGccuacgugauGACCGUg -3'
miRNA:   3'- -CUCUUGGC-CG-GAUCGCaaGC----------CUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 213551 0.75 0.551406
Target:  5'- cGAG-ACCcGCCUGGCcUUCGuGGCCGCa -3'
miRNA:   3'- -CUCuUGGcCGGAUCGcAAGC-CUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 214506 0.73 0.619603
Target:  5'- gGAGAGCCGGCCcuggaAGCG--CGGACagCGCg -3'
miRNA:   3'- -CUCUUGGCCGGa----UCGCaaGCCUG--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.