miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14630 5' -57.2 NC_003521.1 + 229265 0.66 0.937803
Target:  5'- -gUCcgGCGcacGACGGCGCCgGaGGCGUa -3'
miRNA:   3'- agAGuaCGC---CUGUUGCGGgC-CCGUAg -5'
14630 5' -57.2 NC_003521.1 + 150669 0.66 0.937803
Target:  5'- cUCUCcgGCGG-CGGCGCCgcugcugcUGGGUg-- -3'
miRNA:   3'- -AGAGuaCGCCuGUUGCGG--------GCCCGuag -5'
14630 5' -57.2 NC_003521.1 + 195746 0.66 0.937803
Target:  5'- aUCgggCAcGCGGAaGAUGUCCGGGUuUCc -3'
miRNA:   3'- -AGa--GUaCGCCUgUUGCGGGCCCGuAG- -5'
14630 5' -57.2 NC_003521.1 + 232393 0.66 0.933046
Target:  5'- gUCUCGcGCuGGCuGCGCCUGcGGCAc- -3'
miRNA:   3'- -AGAGUaCGcCUGuUGCGGGC-CCGUag -5'
14630 5' -57.2 NC_003521.1 + 128455 0.66 0.933046
Target:  5'- gCUCGcccagGCGGAUcACGUCCauGGGCAg- -3'
miRNA:   3'- aGAGUa----CGCCUGuUGCGGG--CCCGUag -5'
14630 5' -57.2 NC_003521.1 + 138332 0.66 0.933046
Target:  5'- cCUgCGgcUGCGcGACGGCGUCuCGGGCcUCu -3'
miRNA:   3'- aGA-GU--ACGC-CUGUUGCGG-GCCCGuAG- -5'
14630 5' -57.2 NC_003521.1 + 91916 0.66 0.933046
Target:  5'- gCUCgAUGcCGcGGCGGCGCUCcucGGCGUCg -3'
miRNA:   3'- aGAG-UAC-GC-CUGUUGCGGGc--CCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 120543 0.66 0.931575
Target:  5'- cCUCG-GCGGcCGgcggucccgggggaGCGCCCGGGgAUa -3'
miRNA:   3'- aGAGUaCGCCuGU--------------UGCGGGCCCgUAg -5'
14630 5' -57.2 NC_003521.1 + 122732 0.66 0.930085
Target:  5'- -gUCGUGgGcGACGGCGCcgccgauggcugacaCCGGGCAc- -3'
miRNA:   3'- agAGUACgC-CUGUUGCG---------------GGCCCGUag -5'
14630 5' -57.2 NC_003521.1 + 18161 0.66 0.930085
Target:  5'- gCUCAUGCuGGGCAgcguggaggcgcugcGCGCCUGccGGCccuUCg -3'
miRNA:   3'- aGAGUACG-CCUGU---------------UGCGGGC--CCGu--AG- -5'
14630 5' -57.2 NC_003521.1 + 184021 0.66 0.928066
Target:  5'- aCUCGUucGCGcGCGACGCCgguUGGGCGg- -3'
miRNA:   3'- aGAGUA--CGCcUGUUGCGG---GCCCGUag -5'
14630 5' -57.2 NC_003521.1 + 174088 0.66 0.928066
Target:  5'- gUC-CAgucGCGGcACGAUGgCCGGGCAc- -3'
miRNA:   3'- -AGaGUa--CGCC-UGUUGCgGGCCCGUag -5'
14630 5' -57.2 NC_003521.1 + 164434 0.66 0.928066
Target:  5'- -aUCGgcaagGUGGAgGGCGCCgCGGGCc-- -3'
miRNA:   3'- agAGUa----CGCCUgUUGCGG-GCCCGuag -5'
14630 5' -57.2 NC_003521.1 + 16117 0.66 0.928066
Target:  5'- --aCggGCgGGACGugaacuuccacACGCCCGGGCGc- -3'
miRNA:   3'- agaGuaCG-CCUGU-----------UGCGGGCCCGUag -5'
14630 5' -57.2 NC_003521.1 + 94862 0.66 0.922862
Target:  5'- gCUCAUagauguugagGCGGccCAGCaGCUCGGGCGUg -3'
miRNA:   3'- aGAGUA----------CGCCu-GUUG-CGGGCCCGUAg -5'
14630 5' -57.2 NC_003521.1 + 122962 0.66 0.922862
Target:  5'- --aCGUGCGGGguagcCAGacCGUCaCGGGCAUCu -3'
miRNA:   3'- agaGUACGCCU-----GUU--GCGG-GCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 166704 0.66 0.922862
Target:  5'- -gUCcUGC--ACGGCGCCCauGGGCGUCg -3'
miRNA:   3'- agAGuACGccUGUUGCGGG--CCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 77736 0.66 0.917436
Target:  5'- cCUCG-GUGGGCGGCGUCUGGuaGUg -3'
miRNA:   3'- aGAGUaCGCCUGUUGCGGGCCcgUAg -5'
14630 5' -57.2 NC_003521.1 + 183012 0.66 0.917436
Target:  5'- cUUCAUGCGG-CAGC---UGGGCGUCg -3'
miRNA:   3'- aGAGUACGCCuGUUGcggGCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 173038 0.66 0.917436
Target:  5'- gCUCGccgGUGGGCAGCuggGUCUGGGUGUUg -3'
miRNA:   3'- aGAGUa--CGCCUGUUG---CGGGCCCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.