Results 41 - 60 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14636 | 5' | -61.4 | NC_003521.1 | + | 138031 | 0.73 | 0.349309 |
Target: 5'- cGUCGcuGCCGGCGCAcggGGCUGUGGg -3' miRNA: 3'- uCGGCcuCGGCCGCGUaa-CCGACGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 195612 | 0.74 | 0.320666 |
Target: 5'- cAGCCGGcccgccAGCUGGuCGCGUUG-CUGCAGc -3' miRNA: 3'- -UCGGCC------UCGGCC-GCGUAACcGACGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 32353 | 0.75 | 0.293819 |
Target: 5'- uGCCGGAGCCGGCGgGacggGGCuuuUGguGg -3' miRNA: 3'- uCGGCCUCGGCCGCgUaa--CCG---ACguC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 193297 | 0.76 | 0.245448 |
Target: 5'- cGUCGGAGUCGGCGCGggggUGGUggGCAc -3' miRNA: 3'- uCGGCCUCGGCCGCGUa---ACCGa-CGUc -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 121414 | 0.76 | 0.234435 |
Target: 5'- cGCUGGuGCUuGCGCAUgaagGGCUGCGGg -3' miRNA: 3'- uCGGCCuCGGcCGCGUAa---CCGACGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 92004 | 0.71 | 0.445646 |
Target: 5'- gAGCgGGAGCggcgaGGCGCGgcGGCgGCGGc -3' miRNA: 3'- -UCGgCCUCGg----CCGCGUaaCCGaCGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 166135 | 0.71 | 0.46841 |
Target: 5'- cGGCCGGcaGGUCGGCGUAguauuuauccagGcGCUGCAGc -3' miRNA: 3'- -UCGGCC--UCGGCCGCGUaa----------C-CGACGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 188031 | 0.68 | 0.632291 |
Target: 5'- cGUCGGAcaucaGCCGGUGCAgcgGGUUGUc- -3' miRNA: 3'- uCGGCCU-----CGGCCGCGUaa-CCGACGuc -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 148939 | 0.68 | 0.632291 |
Target: 5'- cGCCGu-GCUGGCGCGUguGCUGCuGg -3' miRNA: 3'- uCGGCcuCGGCCGCGUAacCGACGuC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 46560 | 0.68 | 0.622576 |
Target: 5'- cGCCGGGuGCUGaaGCggUGGUUGCGGu -3' miRNA: 3'- uCGGCCU-CGGCcgCGuaACCGACGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 113976 | 0.68 | 0.612869 |
Target: 5'- cGGCaGGcGGCCGGCcggGCAccGGCUGCAa -3' miRNA: 3'- -UCGgCC-UCGGCCG---CGUaaCCGACGUc -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 221906 | 0.68 | 0.610929 |
Target: 5'- uGCCGGcGCgCGGCGCcacccuucggGGCUGCc- -3' miRNA: 3'- uCGGCCuCG-GCCGCGuaa-------CCGACGuc -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 135327 | 0.69 | 0.593499 |
Target: 5'- aGGCCGGGGUCGG-GCg--GGUUGCc- -3' miRNA: 3'- -UCGGCCUCGGCCgCGuaaCCGACGuc -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 50958 | 0.69 | 0.583849 |
Target: 5'- aAGCCuu-GCCGGCGUAgUGGUaagucUGCAGg -3' miRNA: 3'- -UCGGccuCGGCCGCGUaACCG-----ACGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 39013 | 0.69 | 0.555111 |
Target: 5'- aGGCCGGAGCgGGCGCcgccgaaGGaUUGCuGg -3' miRNA: 3'- -UCGGCCUCGgCCGCGuaa----CC-GACGuC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 239561 | 0.7 | 0.5268 |
Target: 5'- cGGCUaGGGUCaGCGUGUUGcGCUGCAGg -3' miRNA: 3'- -UCGGcCUCGGcCGCGUAAC-CGACGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 27118 | 0.7 | 0.5268 |
Target: 5'- aGGCCGGuGCgGGCGaacucCAUgaGGUUGCGGg -3' miRNA: 3'- -UCGGCCuCGgCCGC-----GUAa-CCGACGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 116736 | 0.7 | 0.513773 |
Target: 5'- -cCCGGAGUCGGCGCccuucaaacacgUGGCUuguGCAGc -3' miRNA: 3'- ucGGCCUCGGCCGCGua----------ACCGA---CGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 18697 | 0.7 | 0.499048 |
Target: 5'- cGCCauGGCCGGCGCGauccGGCUGUGGc -3' miRNA: 3'- uCGGccUCGGCCGCGUaa--CCGACGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 24406 | 0.71 | 0.471075 |
Target: 5'- gGGCCcgcGGAGCauagaaagccagaCGGCGCAggGGCcgGCGGg -3' miRNA: 3'- -UCGG---CCUCG-------------GCCGCGUaaCCGa-CGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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