Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 139449 | 0.66 | 0.986386 |
Target: 5'- aGCGGcgCgacggCUCGCGCacccgGGACuuucGCUGCCu -3' miRNA: 3'- cUGCCa-Gaa---GAGCGCG-----CCUG----UGAUGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 98661 | 0.66 | 0.986386 |
Target: 5'- cGACGG-CgagCUUGCGCGGAg---ACCu -3' miRNA: 3'- -CUGCCaGaa-GAGCGCGCCUgugaUGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 231912 | 0.66 | 0.986386 |
Target: 5'- aGCGGcUCUUCUCcCGCGccguagccaGCUACCa -3' miRNA: 3'- cUGCC-AGAAGAGcGCGCcug------UGAUGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 110304 | 0.66 | 0.984736 |
Target: 5'- cACGGUCUgCUCGgGCaGcCGCaggGCCa -3' miRNA: 3'- cUGCCAGAaGAGCgCGcCuGUGa--UGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 8896 | 0.66 | 0.984736 |
Target: 5'- cAUGGUCUgguagcuggCUacgGCGCGGGagaagagcCGCUGCCg -3' miRNA: 3'- cUGCCAGAa--------GAg--CGCGCCU--------GUGAUGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 117729 | 0.66 | 0.984736 |
Target: 5'- gGACGGUCUggaggUGCGCGuGCcCUACg -3' miRNA: 3'- -CUGCCAGAaga--GCGCGCcUGuGAUGg -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 102799 | 0.66 | 0.984736 |
Target: 5'- cGGCGGcCgccagCUCGgGCGGcagcaaguagcgGCGCUGCg -3' miRNA: 3'- -CUGCCaGaa---GAGCgCGCC------------UGUGAUGg -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 187875 | 0.66 | 0.984736 |
Target: 5'- uGGCGGUCaccacCUCGgGCGG-CACggGCg -3' miRNA: 3'- -CUGCCAGaa---GAGCgCGCCuGUGa-UGg -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 217101 | 0.66 | 0.984563 |
Target: 5'- -uCGGuguacUCUUUUagcaucuggaagcCGCGCGGACAC-ACCa -3' miRNA: 3'- cuGCC-----AGAAGA-------------GCGCGCCUGUGaUGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 37382 | 0.66 | 0.982938 |
Target: 5'- uGCGGUgUUCgaggCgGCGgGGGCGCccggGCCu -3' miRNA: 3'- cUGCCAgAAGa---G-CGCgCCUGUGa---UGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 235006 | 0.66 | 0.982938 |
Target: 5'- aGCGGUCccccuggcCUC-CGCGGACGCggguuuacggACCg -3' miRNA: 3'- cUGCCAGaa------GAGcGCGCCUGUGa---------UGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 45108 | 0.66 | 0.98275 |
Target: 5'- aGACGGUggaggcgUUUUacgacaCGCuGCGGGCGCUGCUa -3' miRNA: 3'- -CUGCCA-------GAAGa-----GCG-CGCCUGUGAUGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 47198 | 0.66 | 0.980985 |
Target: 5'- -gUGGUCaggUUUCaGCGCGGGCAacacACCg -3' miRNA: 3'- cuGCCAGa--AGAG-CGCGCCUGUga--UGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 210013 | 0.66 | 0.978868 |
Target: 5'- cGCGGg--UUUCGCcgGCGGGCccucggugcGCUACCg -3' miRNA: 3'- cUGCCagaAGAGCG--CGCCUG---------UGAUGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 95779 | 0.67 | 0.976583 |
Target: 5'- aGACGGUCaUCgugcCGCuCGGcCACgcgACCa -3' miRNA: 3'- -CUGCCAGaAGa---GCGcGCCuGUGa--UGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 6103 | 0.67 | 0.974121 |
Target: 5'- aACGGUCgug-CGaguCGCGGACACgcaguUGCCa -3' miRNA: 3'- cUGCCAGaagaGC---GCGCCUGUG-----AUGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 102318 | 0.67 | 0.974121 |
Target: 5'- cGCGGcaUCgucgUCgugCGCGUGGGCGCcgacGCCg -3' miRNA: 3'- cUGCC--AGa---AGa--GCGCGCCUGUGa---UGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 59080 | 0.67 | 0.974121 |
Target: 5'- -uCGGcCggaUCGCGCGGcCGCUugGCCa -3' miRNA: 3'- cuGCCaGaagAGCGCGCCuGUGA--UGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 145279 | 0.67 | 0.974121 |
Target: 5'- cGGCGGcCagCUCGCGCGccGGCGuCUcGCCg -3' miRNA: 3'- -CUGCCaGaaGAGCGCGC--CUGU-GA-UGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 172053 | 0.67 | 0.973865 |
Target: 5'- -uCGGUggUCUCG-GCGGGCuccucgaACUGCCc -3' miRNA: 3'- cuGCCAgaAGAGCgCGCCUG-------UGAUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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