miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14637 5' -58.4 NC_003521.1 + 25569 0.66 0.908575
Target:  5'- cAGGCGGCCgCgGGGAcaGGUGGgcuuguucauccugCGCa -3'
miRNA:   3'- aUCUGUCGGgGgCCCUa-CCACUa-------------GCG- -5'
14637 5' -58.4 NC_003521.1 + 217017 0.66 0.906224
Target:  5'- cUGGuCAGgguuuUCCCCGGGAUGGaGAU-GCu -3'
miRNA:   3'- -AUCuGUC-----GGGGGCCCUACCaCUAgCG- -5'
14637 5' -58.4 NC_003521.1 + 18909 0.66 0.906224
Target:  5'- -cGGCAGCCCCgaaGGGUGGcGccgCGCg -3'
miRNA:   3'- auCUGUCGGGGgc-CCUACCaCua-GCG- -5'
14637 5' -58.4 NC_003521.1 + 37619 0.66 0.900198
Target:  5'- gGGAUuaccugguGGCCUCCGGcGGugaacaucUGGUGGUgGCa -3'
miRNA:   3'- aUCUG--------UCGGGGGCC-CU--------ACCACUAgCG- -5'
14637 5' -58.4 NC_003521.1 + 193316 0.66 0.893958
Target:  5'- gUGGugGGCa--CGGuGggGGUGGUCGCc -3'
miRNA:   3'- -AUCugUCGgggGCC-CuaCCACUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 84872 0.66 0.893958
Target:  5'- gUAGAaGGCCgCCCGGuccgGGUGG-CGCg -3'
miRNA:   3'- -AUCUgUCGG-GGGCCcua-CCACUaGCG- -5'
14637 5' -58.4 NC_003521.1 + 20908 0.66 0.893958
Target:  5'- aGGAgcaGGUCCCCGGGGaccGGUcucaAUCGCa -3'
miRNA:   3'- aUCUg--UCGGGGGCCCUa--CCAc---UAGCG- -5'
14637 5' -58.4 NC_003521.1 + 143333 0.66 0.893958
Target:  5'- gAGACAGCCgCCaccGAUGGcGGcUCGCg -3'
miRNA:   3'- aUCUGUCGGgGGcc-CUACCaCU-AGCG- -5'
14637 5' -58.4 NC_003521.1 + 67415 0.66 0.893958
Target:  5'- --aGCAGCgCCCCcuccacGGGUGGUGuUUGCg -3'
miRNA:   3'- aucUGUCG-GGGGc-----CCUACCACuAGCG- -5'
14637 5' -58.4 NC_003521.1 + 215040 0.66 0.893322
Target:  5'- gUGGGCugcagccgcguggAGCCCCUGGGcugccUGGUGGU-GCc -3'
miRNA:   3'- -AUCUG-------------UCGGGGGCCCu----ACCACUAgCG- -5'
14637 5' -58.4 NC_003521.1 + 187808 0.66 0.887508
Target:  5'- -cGGCGGCgaCCUGGGuugggaguuuGUGGUGG-CGCg -3'
miRNA:   3'- auCUGUCGg-GGGCCC----------UACCACUaGCG- -5'
14637 5' -58.4 NC_003521.1 + 172552 0.66 0.88085
Target:  5'- gGGAUcucguGCCgcuguCCCGGGGUcGGcGGUCGCa -3'
miRNA:   3'- aUCUGu----CGG-----GGGCCCUA-CCaCUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 90633 0.66 0.88085
Target:  5'- cAGAaGGCCCgCCGGGAgcGGUag-CGCa -3'
miRNA:   3'- aUCUgUCGGG-GGCCCUa-CCAcuaGCG- -5'
14637 5' -58.4 NC_003521.1 + 108277 0.66 0.88085
Target:  5'- aAGACGGCggcaCCGaGGgcGGUGGUgGCg -3'
miRNA:   3'- aUCUGUCGgg--GGC-CCuaCCACUAgCG- -5'
14637 5' -58.4 NC_003521.1 + 84569 0.66 0.88085
Target:  5'- --aGCGGCCCUgguuCGGGAUGaUGGUCaGCu -3'
miRNA:   3'- aucUGUCGGGG----GCCCUACcACUAG-CG- -5'
14637 5' -58.4 NC_003521.1 + 44836 0.67 0.86693
Target:  5'- --cACAGCUCCUGGGGcUGGUGAc--- -3'
miRNA:   3'- aucUGUCGGGGGCCCU-ACCACUagcg -5'
14637 5' -58.4 NC_003521.1 + 74920 0.67 0.86693
Target:  5'- gAGuCGGCCCggcagcgCGGGGUGGUGuaccCGCc -3'
miRNA:   3'- aUCuGUCGGGg------GCCCUACCACua--GCG- -5'
14637 5' -58.4 NC_003521.1 + 211330 0.67 0.86693
Target:  5'- cAGGCGGUCCCgCGGGcgcgaGUGGUuGGgguccCGCa -3'
miRNA:   3'- aUCUGUCGGGG-GCCC-----UACCA-CUa----GCG- -5'
14637 5' -58.4 NC_003521.1 + 119105 0.67 0.86693
Target:  5'- -cGGCAGCUCgCCGGGcgacUGG-GGUCGg -3'
miRNA:   3'- auCUGUCGGG-GGCCCu---ACCaCUAGCg -5'
14637 5' -58.4 NC_003521.1 + 148441 0.67 0.859677
Target:  5'- -cGGCGGCUCCaGGGGUggccGGUGcgUGCu -3'
miRNA:   3'- auCUGUCGGGGgCCCUA----CCACuaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.