Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14637 | 5' | -58.4 | NC_003521.1 | + | 238458 | 0.67 | 0.828833 |
Target: 5'- aGGGCGGCCUCggCGGGcgGGgcgGAgaCGCg -3' miRNA: 3'- aUCUGUCGGGG--GCCCuaCCa--CUa-GCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 236279 | 0.67 | 0.852235 |
Target: 5'- gUAGugAcUCCCCGGGGacccUGcgcGUGAUCGCc -3' miRNA: 3'- -AUCugUcGGGGGCCCU----AC---CACUAGCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 235125 | 1.09 | 0.002851 |
Target: 5'- aUAGACAGCCCCCGGGAUGGUGAUCGCc -3' miRNA: 3'- -AUCUGUCGGGGGCCCUACCACUAGCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 232206 | 0.78 | 0.274064 |
Target: 5'- ----gGGCCCCCGcGGGUGGUGGUgGCu -3' miRNA: 3'- aucugUCGGGGGC-CCUACCACUAgCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 226293 | 0.69 | 0.759732 |
Target: 5'- -uGGCguacgAGCCCUCGGGcGUGGUG-UCGUu -3' miRNA: 3'- auCUG-----UCGGGGGCCC-UACCACuAGCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 224317 | 0.69 | 0.731891 |
Target: 5'- cAGAC-GCCCCCGucAcGGUGAcUCGCg -3' miRNA: 3'- aUCUGuCGGGGGCccUaCCACU-AGCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 217364 | 0.68 | 0.820694 |
Target: 5'- gUAG-UAGUCCCCGuaccaGAUGGcGGUCGCg -3' miRNA: 3'- -AUCuGUCGGGGGCc----CUACCaCUAGCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 217017 | 0.66 | 0.906224 |
Target: 5'- cUGGuCAGgguuuUCCCCGGGAUGGaGAU-GCu -3' miRNA: 3'- -AUCuGUC-----GGGGGCCCUACCaCUAgCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 215040 | 0.66 | 0.893322 |
Target: 5'- gUGGGCugcagccgcguggAGCCCCUGGGcugccUGGUGGU-GCc -3' miRNA: 3'- -AUCUG-------------UCGGGGGCCCu----ACCACUAgCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 213605 | 0.67 | 0.859677 |
Target: 5'- -uGACcaGGCUgUUGGGGUGGcGGUCGCc -3' miRNA: 3'- auCUG--UCGGgGGCCCUACCaCUAGCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 211330 | 0.67 | 0.86693 |
Target: 5'- cAGGCGGUCCCgCGGGcgcgaGUGGUuGGgguccCGCa -3' miRNA: 3'- aUCUGUCGGGG-GCCC-----UACCA-CUa----GCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 207218 | 0.67 | 0.859677 |
Target: 5'- -cGACAGCaacuauUUCGGGGUGGUGcgCGa -3' miRNA: 3'- auCUGUCGg-----GGGCCCUACCACuaGCg -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 193316 | 0.66 | 0.893958 |
Target: 5'- gUGGugGGCa--CGGuGggGGUGGUCGCc -3' miRNA: 3'- -AUCugUCGgggGCC-CuaCCACUAGCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 188740 | 0.69 | 0.768816 |
Target: 5'- gAGcGCGGCCCUC---AUGGUGGUCGCu -3' miRNA: 3'- aUC-UGUCGGGGGcccUACCACUAGCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 187808 | 0.66 | 0.887508 |
Target: 5'- -cGGCGGCgaCCUGGGuugggaguuuGUGGUGG-CGCg -3' miRNA: 3'- auCUGUCGg-GGGCCC----------UACCACUaGCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 186501 | 0.68 | 0.819872 |
Target: 5'- -cGAgAGCCCCguCGGGAUcucgggcGGUG-UCGCc -3' miRNA: 3'- auCUgUCGGGG--GCCCUA-------CCACuAGCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 178805 | 0.67 | 0.828833 |
Target: 5'- gAGGCAuGCCCggCGGGcgGGUcGAUCGa -3' miRNA: 3'- aUCUGU-CGGGg-GCCCuaCCA-CUAGCg -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 178798 | 0.72 | 0.605725 |
Target: 5'- aGGACgGGCCCCCGGGcaccucGUGGUaucUCGUg -3' miRNA: 3'- aUCUG-UCGGGGGCCC------UACCAcu-AGCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 172552 | 0.66 | 0.88085 |
Target: 5'- gGGAUcucguGCCgcuguCCCGGGGUcGGcGGUCGCa -3' miRNA: 3'- aUCUGu----CGG-----GGGCCCUA-CCaCUAGCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 152505 | 0.68 | 0.803953 |
Target: 5'- cAGAUAgGCCUCgGGGAUGG-GGUCcaggGCg -3' miRNA: 3'- aUCUGU-CGGGGgCCCUACCaCUAG----CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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