miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 3' -52.8 NC_003521.1 + 123485 0.66 0.995313
Target:  5'- cGUGUccgUCGcCGGCGGggugucgucgucgCCGCUGCCGc -3'
miRNA:   3'- -CACA---AGCuGUCGCUaaa----------GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 120572 0.66 0.995243
Target:  5'- gGUG-UCGA-GGCGAUgcacggcgCgGCCGCCGg -3'
miRNA:   3'- -CACaAGCUgUCGCUAaa------GgUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 14672 0.66 0.995243
Target:  5'- cUGaaCGACGcCGAgugCCGCCGCUGg -3'
miRNA:   3'- cACaaGCUGUcGCUaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 124087 0.66 0.995243
Target:  5'- cGUGUUUGAagGGCGccgacUCCgggACCGCCGu -3'
miRNA:   3'- -CACAAGCUg-UCGCuaa--AGG---UGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 182973 0.66 0.995243
Target:  5'- cGUGUcuagcagCGACGGCGuucggcgUCACCgGCCGa -3'
miRNA:   3'- -CACAa------GCUGUCGCuaaa---GGUGG-CGGC- -5'
14638 3' -52.8 NC_003521.1 + 173242 0.66 0.995243
Target:  5'- cGUGUuggCGACucuggcccGCGGggcCCGCCGCCu -3'
miRNA:   3'- -CACAa--GCUGu-------CGCUaaaGGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 170981 0.66 0.995243
Target:  5'- ---aUCGGCAGCGucaUCgACCuGCCGc -3'
miRNA:   3'- cacaAGCUGUCGCuaaAGgUGG-CGGC- -5'
14638 3' -52.8 NC_003521.1 + 150673 0.66 0.995243
Target:  5'- ----cCGGCGGCGGcg-CCGCUGCUGc -3'
miRNA:   3'- cacaaGCUGUCGCUaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 21957 0.66 0.994501
Target:  5'- aGUGggCGagcGCGGCGGgacucguucggUUUCGCCGCUGa -3'
miRNA:   3'- -CACaaGC---UGUCGCUa----------AAGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 110908 0.66 0.994501
Target:  5'- gGUGUUCGcGCAGCaGGcgcgCgGCCGCCc -3'
miRNA:   3'- -CACAAGC-UGUCG-CUaaa-GgUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 139319 0.66 0.994501
Target:  5'- cUGgUCGGCcGCGucuggCCGCCGCUGc -3'
miRNA:   3'- cACaAGCUGuCGCuaaa-GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 165269 0.66 0.994501
Target:  5'- -aGggCGcUGGCGuag-CCGCCGCCGg -3'
miRNA:   3'- caCaaGCuGUCGCuaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 124447 0.66 0.994501
Target:  5'- cGUGguugggccgCGGCGGCacgcgUUCGCCGCCGc -3'
miRNA:   3'- -CACaa-------GCUGUCGcuaa-AGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 5535 0.66 0.994501
Target:  5'- gGUGa-CGGCAGcCGGcgcggCCGCCGCCa -3'
miRNA:   3'- -CACaaGCUGUC-GCUaaa--GGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 198208 0.66 0.994501
Target:  5'- ----aUGGCGGCGAcgg-CGCCGCCGg -3'
miRNA:   3'- cacaaGCUGUCGCUaaagGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 52922 0.66 0.993667
Target:  5'- -cGUcaUCGACucGCGAUUgUCCACCcaGCUGa -3'
miRNA:   3'- caCA--AGCUGu-CGCUAA-AGGUGG--CGGC- -5'
14638 3' -52.8 NC_003521.1 + 100251 0.66 0.993667
Target:  5'- gGUGccCGACGaCGAgcugucgCCGCCGCCGc -3'
miRNA:   3'- -CACaaGCUGUcGCUaaa----GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 204620 0.66 0.993667
Target:  5'- aUGUggCGACAGCGuUUgagCCGCUcgGCCa -3'
miRNA:   3'- cACAa-GCUGUCGCuAAa--GGUGG--CGGc -5'
14638 3' -52.8 NC_003521.1 + 56908 0.66 0.993667
Target:  5'- -cGUcgCGACAGCGccgcagCACCGCCu -3'
miRNA:   3'- caCAa-GCUGUCGCuaaag-GUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 126957 0.66 0.992736
Target:  5'- ----gUGACGGCGcuuacaCCACCGCCa -3'
miRNA:   3'- cacaaGCUGUCGCuaaa--GGUGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.