miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14639 5' -62.4 NC_003521.1 + 11846 0.68 0.627741
Target:  5'- gUCCUgCGCCgcccgCGcaccUCCUCGGaCGAGGa -3'
miRNA:   3'- -AGGAgGCGGa----GC----AGGAGCCcGCUCCg -5'
14639 5' -62.4 NC_003521.1 + 121519 0.69 0.5995
Target:  5'- aCCaUCCGCCUCa-CCUggaCGGGCGAGa- -3'
miRNA:   3'- aGG-AGGCGGAGcaGGA---GCCCGCUCcg -5'
14639 5' -62.4 NC_003521.1 + 64898 0.71 0.489723
Target:  5'- gUCCUCCuCCggcUCCUCGGGCcAGGUc -3'
miRNA:   3'- -AGGAGGcGGagcAGGAGCCCGcUCCG- -5'
14639 5' -62.4 NC_003521.1 + 48399 0.74 0.324833
Target:  5'- cUCCUUCGUCUC--CCUCGagucucGGCGAGGCg -3'
miRNA:   3'- -AGGAGGCGGAGcaGGAGC------CCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 197396 0.67 0.706393
Target:  5'- gCCgCCGCCUCcUCgUCGGGCacgcaguaggaagggGAGGg -3'
miRNA:   3'- aGGaGGCGGAGcAGgAGCCCG---------------CUCCg -5'
14639 5' -62.4 NC_003521.1 + 180371 0.68 0.656007
Target:  5'- gCCUCCGCCg-GUgUUCGaagaagaaGGUGGGGCu -3'
miRNA:   3'- aGGAGGCGGagCAgGAGC--------CCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 174971 0.69 0.59012
Target:  5'- -gUUCCGUCUCGUCCUgcaGGGCcuucuuGGCc -3'
miRNA:   3'- agGAGGCGGAGCAGGAg--CCCGcu----CCG- -5'
14639 5' -62.4 NC_003521.1 + 169395 0.77 0.234662
Target:  5'- aUCC-CCGCCUCGUCCUCugucaGGUucGGGGCc -3'
miRNA:   3'- -AGGaGGCGGAGCAGGAGc----CCG--CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 204664 0.68 0.646593
Target:  5'- gCCgUCCGggguguCCUCcUCCUCGGGCaGGGUc -3'
miRNA:   3'- aGG-AGGC------GGAGcAGGAGCCCGcUCCG- -5'
14639 5' -62.4 NC_003521.1 + 87779 0.78 0.204927
Target:  5'- gCCUgggggCCGCCUCGUCgguCUCGGGCGgccuGGGCc -3'
miRNA:   3'- aGGA-----GGCGGAGCAG---GAGCCCGC----UCCG- -5'
14639 5' -62.4 NC_003521.1 + 100224 0.69 0.5995
Target:  5'- cUCCUCgaagcggagCGUCUCGccggccgcgaaaUCCUCGGGCGGcGCc -3'
miRNA:   3'- -AGGAG---------GCGGAGC------------AGGAGCCCGCUcCG- -5'
14639 5' -62.4 NC_003521.1 + 38233 0.68 0.637169
Target:  5'- ---gCgGCCUCGg---CGGGCGGGGCg -3'
miRNA:   3'- aggaGgCGGAGCaggaGCCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 178773 0.7 0.54371
Target:  5'- gUCUUCaugguuGCggCGUCCgcgggaCGGGCGAGGCa -3'
miRNA:   3'- -AGGAGg-----CGgaGCAGGa-----GCCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 167150 0.7 0.507462
Target:  5'- -gCagCGCCUUGggcgCCUCGGGCgucuugGAGGCg -3'
miRNA:   3'- agGagGCGGAGCa---GGAGCCCG------CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 207381 0.72 0.421946
Target:  5'- gCCUUCGCCUa--CCUgcCGGGCGAGGa -3'
miRNA:   3'- aGGAGGCGGAgcaGGA--GCCCGCUCCg -5'
14639 5' -62.4 NC_003521.1 + 127273 0.74 0.352862
Target:  5'- cUCCUCgCGCUgguggUCGUCC-CGGcGCGAGGg -3'
miRNA:   3'- -AGGAG-GCGG-----AGCAGGaGCC-CGCUCCg -5'
14639 5' -62.4 NC_003521.1 + 236590 0.66 0.739188
Target:  5'- cUCC-CCGUCUCgGUCCUCcucccgGGGCc-GGCu -3'
miRNA:   3'- -AGGaGGCGGAG-CAGGAG------CCCGcuCCG- -5'
14639 5' -62.4 NC_003521.1 + 189332 0.67 0.721074
Target:  5'- aCC-CUGCUcaucaUCGucuUCCUCGGGCugccGGGGCa -3'
miRNA:   3'- aGGaGGCGG-----AGC---AGGAGCCCG----CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 40331 0.67 0.693435
Target:  5'- gCCUCCGCUgcggGUCCcgggGGGUGGGGg -3'
miRNA:   3'- aGGAGGCGGag--CAGGag--CCCGCUCCg -5'
14639 5' -62.4 NC_003521.1 + 136390 0.68 0.664466
Target:  5'- -aCUCCaCCUCGgCCgCGGGCcgcguguGAGGCa -3'
miRNA:   3'- agGAGGcGGAGCaGGaGCCCG-------CUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.