miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14639 5' -62.4 NC_003521.1 + 153466 0.79 0.166471
Target:  5'- aCCUCgGCCUCcUCCUCGGGCuccGGCu -3'
miRNA:   3'- aGGAGgCGGAGcAGGAGCCCGcu-CCG- -5'
14639 5' -62.4 NC_003521.1 + 174971 0.69 0.59012
Target:  5'- -gUUCCGUCUCGUCCUgcaGGGCcuucuuGGCc -3'
miRNA:   3'- agGAGGCGGAGCAGGAg--CCCGcu----CCG- -5'
14639 5' -62.4 NC_003521.1 + 121519 0.69 0.5995
Target:  5'- aCCaUCCGCCUCa-CCUggaCGGGCGAGa- -3'
miRNA:   3'- aGG-AGGCGGAGcaGGA---GCCCGCUCcg -5'
14639 5' -62.4 NC_003521.1 + 196448 0.66 0.7914
Target:  5'- ----aCGCacCUCGgCCUCGGGCGuGGGCc -3'
miRNA:   3'- aggagGCG--GAGCaGGAGCCCGC-UCCG- -5'
14639 5' -62.4 NC_003521.1 + 127273 0.74 0.352862
Target:  5'- cUCCUCgCGCUgguggUCGUCC-CGGcGCGAGGg -3'
miRNA:   3'- -AGGAG-GCGG-----AGCAGGaGCC-CGCUCCg -5'
14639 5' -62.4 NC_003521.1 + 236532 0.73 0.360131
Target:  5'- cCCUCUGCCUUGUCgUCGuucGGCGucGCu -3'
miRNA:   3'- aGGAGGCGGAGCAGgAGC---CCGCucCG- -5'
14639 5' -62.4 NC_003521.1 + 207381 0.72 0.421946
Target:  5'- gCCUUCGCCUa--CCUgcCGGGCGAGGa -3'
miRNA:   3'- aGGAGGCGGAgcaGGA--GCCCGCUCCg -5'
14639 5' -62.4 NC_003521.1 + 37307 0.72 0.446717
Target:  5'- gCCUCCGUCUgcaCGucUCCUCuGGGUGGGGg -3'
miRNA:   3'- aGGAGGCGGA---GC--AGGAG-CCCGCUCCg -5'
14639 5' -62.4 NC_003521.1 + 167150 0.7 0.507462
Target:  5'- -gCagCGCCUUGggcgCCUCGGGCgucuugGAGGCg -3'
miRNA:   3'- agGagGCGGAGCa---GGAGCCCG------CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 123628 0.69 0.571442
Target:  5'- aUCUCCaCCg---CCUCGGGCGGcGGCa -3'
miRNA:   3'- aGGAGGcGGagcaGGAGCCCGCU-CCG- -5'
14639 5' -62.4 NC_003521.1 + 84738 0.7 0.525468
Target:  5'- aCUgCCGUCgUCGUCuugCUCGGGCGcGGCg -3'
miRNA:   3'- aGGaGGCGG-AGCAG---GAGCCCGCuCCG- -5'
14639 5' -62.4 NC_003521.1 + 64898 0.71 0.489723
Target:  5'- gUCCUCCuCCggcUCCUCGGGCcAGGUc -3'
miRNA:   3'- -AGGAGGcGGagcAGGAGCCCGcUCCG- -5'
14639 5' -62.4 NC_003521.1 + 87779 0.78 0.204927
Target:  5'- gCCUgggggCCGCCUCGUCgguCUCGGGCGgccuGGGCc -3'
miRNA:   3'- aGGA-----GGCGGAGCAG---GAGCCCGC----UCCG- -5'
14639 5' -62.4 NC_003521.1 + 178773 0.7 0.54371
Target:  5'- gUCUUCaugguuGCggCGUCCgcgggaCGGGCGAGGCa -3'
miRNA:   3'- -AGGAGg-----CGgaGCAGGa-----GCCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 169395 0.77 0.234662
Target:  5'- aUCC-CCGCCUCGUCCUCugucaGGUucGGGGCc -3'
miRNA:   3'- -AGGaGGCGGAGCAGGAGc----CCG--CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 39823 0.72 0.446717
Target:  5'- gUCCUCCGCCgauggCGccugcuuggCCUcCGGcGUGGGGCu -3'
miRNA:   3'- -AGGAGGCGGa----GCa--------GGA-GCC-CGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 29699 0.7 0.562156
Target:  5'- --aUCCGCUgCGUCCUCGGcGCcuGGCu -3'
miRNA:   3'- aggAGGCGGaGCAGGAGCC-CGcuCCG- -5'
14639 5' -62.4 NC_003521.1 + 100224 0.69 0.5995
Target:  5'- cUCCUCgaagcggagCGUCUCGccggccgcgaaaUCCUCGGGCGGcGCc -3'
miRNA:   3'- -AGGAG---------GCGGAGC------------AGGAGCCCGCUcCG- -5'
14639 5' -62.4 NC_003521.1 + 48399 0.74 0.324833
Target:  5'- cUCCUUCGUCUC--CCUCGagucucGGCGAGGCg -3'
miRNA:   3'- -AGGAGGCGGAGcaGGAGC------CCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 211441 0.73 0.390239
Target:  5'- gUCgUCCuCCUCGgCCUCGcGGuCGGGGCa -3'
miRNA:   3'- -AGgAGGcGGAGCaGGAGC-CC-GCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.