miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14640 5' -54.8 NC_003521.1 + 125093 0.66 0.982754
Target:  5'- aUGaGGUGCAG--GCgCUGCGGGAUGg -3'
miRNA:   3'- gACaCCAUGUUguUG-GGCGCCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 234602 0.66 0.982754
Target:  5'- gCUGUGGUGCGAC----UGCGGGAa-- -3'
miRNA:   3'- -GACACCAUGUUGuuggGCGCCCUgca -5'
14640 5' -54.8 NC_003521.1 + 91939 0.66 0.982754
Target:  5'- -gGUGGacccgGCGGCGGacCCCGUGGcGGCGa -3'
miRNA:   3'- gaCACCa----UGUUGUU--GGGCGCC-CUGCa -5'
14640 5' -54.8 NC_003521.1 + 17975 0.66 0.982754
Target:  5'- gCUGUGGUGCGaguacguguaucGCcACCCGCa-GACGc -3'
miRNA:   3'- -GACACCAUGU------------UGuUGGGCGccCUGCa -5'
14640 5' -54.8 NC_003521.1 + 67563 0.66 0.982754
Target:  5'- aCUGUGucagGCGGCGGgcCCCGCGGGcCa- -3'
miRNA:   3'- -GACACca--UGUUGUU--GGGCGCCCuGca -5'
14640 5' -54.8 NC_003521.1 + 65043 0.66 0.982371
Target:  5'- gCUGUGGgguaugccucuaACAACgAGCCCG-GGGACc- -3'
miRNA:   3'- -GACACCa-----------UGUUG-UUGGGCgCCCUGca -5'
14640 5' -54.8 NC_003521.1 + 149055 0.66 0.980775
Target:  5'- gUGUGGgGgGAUgcggGACCCGCGGGGu-- -3'
miRNA:   3'- gACACCaUgUUG----UUGGGCGCCCUgca -5'
14640 5' -54.8 NC_003521.1 + 105814 0.66 0.980775
Target:  5'- ---cGGUGCccGGCAGCCagaugGUGGGGCGg -3'
miRNA:   3'- gacaCCAUG--UUGUUGGg----CGCCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 222821 0.66 0.980775
Target:  5'- -gGUGGUGgaaAACGGCguCUGCGGGugGc -3'
miRNA:   3'- gaCACCAUg--UUGUUG--GGCGCCCugCa -5'
14640 5' -54.8 NC_003521.1 + 155430 0.66 0.980775
Target:  5'- gCUGUGcGaGCuggcCGACCCGCuGGGCGa -3'
miRNA:   3'- -GACAC-CaUGuu--GUUGGGCGcCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 32405 0.66 0.980775
Target:  5'- -cGUGcgacACAGCAGCCCGUGGcGcACGg -3'
miRNA:   3'- gaCACca--UGUUGUUGGGCGCC-C-UGCa -5'
14640 5' -54.8 NC_003521.1 + 239457 0.66 0.978631
Target:  5'- ---cGGggACAGCGgugGCCCGCGGcGCGUu -3'
miRNA:   3'- gacaCCa-UGUUGU---UGGGCGCCcUGCA- -5'
14640 5' -54.8 NC_003521.1 + 164482 0.66 0.978631
Target:  5'- --cUGGUGCGcaagACGGCCUGCGaguucgucaaGGGCGUg -3'
miRNA:   3'- gacACCAUGU----UGUUGGGCGC----------CCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 139495 0.66 0.978631
Target:  5'- ----cGUACAccGCAACCCGCaGGaGACGg -3'
miRNA:   3'- gacacCAUGU--UGUUGGGCG-CC-CUGCa -5'
14640 5' -54.8 NC_003521.1 + 39229 0.66 0.978631
Target:  5'- ---cGGggACAGCGgugGCCCGCGGcGCGUu -3'
miRNA:   3'- gacaCCa-UGUUGU---UGGGCGCCcUGCA- -5'
14640 5' -54.8 NC_003521.1 + 114436 0.66 0.976315
Target:  5'- cCUGUGGcgGCAccaGACCCGCGaGaACGUc -3'
miRNA:   3'- -GACACCa-UGUug-UUGGGCGC-CcUGCA- -5'
14640 5' -54.8 NC_003521.1 + 77667 0.66 0.976315
Target:  5'- -cGUcGGgagACAGCAGgCCGgGGGGCa- -3'
miRNA:   3'- gaCA-CCa--UGUUGUUgGGCgCCCUGca -5'
14640 5' -54.8 NC_003521.1 + 136616 0.66 0.972234
Target:  5'- gCUG-GGcUGCAGCAGCaCguaaucggccacgggCGCGGGGCGg -3'
miRNA:   3'- -GACaCC-AUGUUGUUG-G---------------GCGCCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 120914 0.66 0.971139
Target:  5'- gCUGcuUGcGUuuGCGGCuGCCCGCGGcGGCGg -3'
miRNA:   3'- -GAC--AC-CA--UGUUGuUGGGCGCC-CUGCa -5'
14640 5' -54.8 NC_003521.1 + 101772 0.66 0.971139
Target:  5'- -gGUGGUGCAGCAGgUUGCGcaggucaguuGGGCGc -3'
miRNA:   3'- gaCACCAUGUUGUUgGGCGC----------CCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.