Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14640 | 5' | -54.8 | NC_003521.1 | + | 91939 | 0.66 | 0.982754 |
Target: 5'- -gGUGGacccgGCGGCGGacCCCGUGGcGGCGa -3' miRNA: 3'- gaCACCa----UGUUGUU--GGGCGCC-CUGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 125093 | 0.66 | 0.982754 |
Target: 5'- aUGaGGUGCAG--GCgCUGCGGGAUGg -3' miRNA: 3'- gACaCCAUGUUguUG-GGCGCCCUGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 17975 | 0.66 | 0.982754 |
Target: 5'- gCUGUGGUGCGaguacguguaucGCcACCCGCa-GACGc -3' miRNA: 3'- -GACACCAUGU------------UGuUGGGCGccCUGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 234602 | 0.66 | 0.982754 |
Target: 5'- gCUGUGGUGCGAC----UGCGGGAa-- -3' miRNA: 3'- -GACACCAUGUUGuuggGCGCCCUgca -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 67563 | 0.66 | 0.982754 |
Target: 5'- aCUGUGucagGCGGCGGgcCCCGCGGGcCa- -3' miRNA: 3'- -GACACca--UGUUGUU--GGGCGCCCuGca -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 65043 | 0.66 | 0.982371 |
Target: 5'- gCUGUGGgguaugccucuaACAACgAGCCCG-GGGACc- -3' miRNA: 3'- -GACACCa-----------UGUUG-UUGGGCgCCCUGca -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 222821 | 0.66 | 0.980775 |
Target: 5'- -gGUGGUGgaaAACGGCguCUGCGGGugGc -3' miRNA: 3'- gaCACCAUg--UUGUUG--GGCGCCCugCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 105814 | 0.66 | 0.980775 |
Target: 5'- ---cGGUGCccGGCAGCCagaugGUGGGGCGg -3' miRNA: 3'- gacaCCAUG--UUGUUGGg----CGCCCUGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 155430 | 0.66 | 0.980775 |
Target: 5'- gCUGUGcGaGCuggcCGACCCGCuGGGCGa -3' miRNA: 3'- -GACAC-CaUGuu--GUUGGGCGcCCUGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 32405 | 0.66 | 0.980775 |
Target: 5'- -cGUGcgacACAGCAGCCCGUGGcGcACGg -3' miRNA: 3'- gaCACca--UGUUGUUGGGCGCC-C-UGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 149055 | 0.66 | 0.980775 |
Target: 5'- gUGUGGgGgGAUgcggGACCCGCGGGGu-- -3' miRNA: 3'- gACACCaUgUUG----UUGGGCGCCCUgca -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 239457 | 0.66 | 0.978631 |
Target: 5'- ---cGGggACAGCGgugGCCCGCGGcGCGUu -3' miRNA: 3'- gacaCCa-UGUUGU---UGGGCGCCcUGCA- -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 164482 | 0.66 | 0.978631 |
Target: 5'- --cUGGUGCGcaagACGGCCUGCGaguucgucaaGGGCGUg -3' miRNA: 3'- gacACCAUGU----UGUUGGGCGC----------CCUGCA- -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 139495 | 0.66 | 0.978631 |
Target: 5'- ----cGUACAccGCAACCCGCaGGaGACGg -3' miRNA: 3'- gacacCAUGU--UGUUGGGCG-CC-CUGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 39229 | 0.66 | 0.978631 |
Target: 5'- ---cGGggACAGCGgugGCCCGCGGcGCGUu -3' miRNA: 3'- gacaCCa-UGUUGU---UGGGCGCCcUGCA- -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 114436 | 0.66 | 0.976315 |
Target: 5'- cCUGUGGcgGCAccaGACCCGCGaGaACGUc -3' miRNA: 3'- -GACACCa-UGUug-UUGGGCGC-CcUGCA- -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 77667 | 0.66 | 0.976315 |
Target: 5'- -cGUcGGgagACAGCAGgCCGgGGGGCa- -3' miRNA: 3'- gaCA-CCa--UGUUGUUgGGCgCCCUGca -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 136616 | 0.66 | 0.972234 |
Target: 5'- gCUG-GGcUGCAGCAGCaCguaaucggccacgggCGCGGGGCGg -3' miRNA: 3'- -GACaCC-AUGUUGUUG-G---------------GCGCCCUGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 120914 | 0.66 | 0.971139 |
Target: 5'- gCUGcuUGcGUuuGCGGCuGCCCGCGGcGGCGg -3' miRNA: 3'- -GAC--AC-CA--UGUUGuUGGGCGCC-CUGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 101772 | 0.66 | 0.971139 |
Target: 5'- -gGUGGUGCAGCAGgUUGCGcaggucaguuGGGCGc -3' miRNA: 3'- gaCACCAUGUUGUUgGGCGC----------CCUGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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