miRNA display CGI


Results 1 - 20 of 311 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14641 3' -59.8 NC_003521.1 + 167667 0.66 0.885649
Target:  5'- --aGGUCGCAGGCcgaGGCGGcGCCGccgCCg -3'
miRNA:   3'- gagCCGGCGUUCG---CCGCU-UGGCca-GG- -5'
14641 3' -59.8 NC_003521.1 + 175445 0.66 0.885649
Target:  5'- gCUCGG-CGUAcgaucGGCGGCGcGCCGucUCCc -3'
miRNA:   3'- -GAGCCgGCGU-----UCGCCGCuUGGCc-AGG- -5'
14641 3' -59.8 NC_003521.1 + 125204 0.66 0.885649
Target:  5'- -aUGGCCGCcaugguGGCGGCGGcaACgCGGg-- -3'
miRNA:   3'- gaGCCGGCGu-----UCGCCGCU--UG-GCCagg -5'
14641 3' -59.8 NC_003521.1 + 15527 0.66 0.885649
Target:  5'- -gCGGCgGCAuGUGGCGAacgcGCUGGg-- -3'
miRNA:   3'- gaGCCGgCGUuCGCCGCU----UGGCCagg -5'
14641 3' -59.8 NC_003521.1 + 188781 0.66 0.885649
Target:  5'- uCUUGGCCGUGguguucacGGUGGUucuGAACCGGa-- -3'
miRNA:   3'- -GAGCCGGCGU--------UCGCCG---CUUGGCCagg -5'
14641 3' -59.8 NC_003521.1 + 238540 0.66 0.885649
Target:  5'- gUCGGCCaGCGGGUagaGGUG-GCC-GUCCu -3'
miRNA:   3'- gAGCCGG-CGUUCG---CCGCuUGGcCAGG- -5'
14641 3' -59.8 NC_003521.1 + 198383 0.66 0.885649
Target:  5'- -aCGGCguugugGCGGGCGGCGAcuCCGG-Cg -3'
miRNA:   3'- gaGCCGg-----CGUUCGCCGCUu-GGCCaGg -5'
14641 3' -59.8 NC_003521.1 + 52686 0.66 0.885649
Target:  5'- -cCGGCaGCGucGGCGGUGccAGCCGcUCCa -3'
miRNA:   3'- gaGCCGgCGU--UCGCCGC--UUGGCcAGG- -5'
14641 3' -59.8 NC_003521.1 + 38313 0.66 0.885649
Target:  5'- gUCGGCCaGCGGGUagaGGUG-GCC-GUCCu -3'
miRNA:   3'- gAGCCGG-CGUUCG---CCGCuUGGcCAGG- -5'
14641 3' -59.8 NC_003521.1 + 213138 0.66 0.885649
Target:  5'- -gCGGCCGCA----GCGAACUgaagacguuGGUCCa -3'
miRNA:   3'- gaGCCGGCGUucgcCGCUUGG---------CCAGG- -5'
14641 3' -59.8 NC_003521.1 + 150569 0.66 0.885649
Target:  5'- -gUGGCgGC-GGCGGCG-GCgCGGcUCCu -3'
miRNA:   3'- gaGCCGgCGuUCGCCGCuUG-GCC-AGG- -5'
14641 3' -59.8 NC_003521.1 + 50844 0.66 0.885649
Target:  5'- -aCGGCgGCuuuuuGagaaGGUGGACgGGUCCc -3'
miRNA:   3'- gaGCCGgCGuu---Cg---CCGCUUGgCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 148559 0.66 0.885649
Target:  5'- -cCGGCCGguAGCGGC--AgCGGcacCCa -3'
miRNA:   3'- gaGCCGGCguUCGCCGcuUgGCCa--GG- -5'
14641 3' -59.8 NC_003521.1 + 140563 0.66 0.885649
Target:  5'- -gCGGCgGC-GGCGGCGAcaGCUcGUCg -3'
miRNA:   3'- gaGCCGgCGuUCGCCGCU--UGGcCAGg -5'
14641 3' -59.8 NC_003521.1 + 166746 0.66 0.879088
Target:  5'- gUCGGCCaGCAccAGCuG-GAugCGGUCg -3'
miRNA:   3'- gAGCCGG-CGU--UCGcCgCUugGCCAGg -5'
14641 3' -59.8 NC_003521.1 + 98477 0.66 0.879088
Target:  5'- -gCGGCCGC-GGCGGCcguGgCGGcggCCu -3'
miRNA:   3'- gaGCCGGCGuUCGCCGcu-UgGCCa--GG- -5'
14641 3' -59.8 NC_003521.1 + 92126 0.66 0.879088
Target:  5'- -cCGGgUGCGguucgGGCGGCGGGgcuucCCGGcUCCu -3'
miRNA:   3'- gaGCCgGCGU-----UCGCCGCUU-----GGCC-AGG- -5'
14641 3' -59.8 NC_003521.1 + 98252 0.66 0.879088
Target:  5'- -gCGGCCacgGCGGGCacGGCGAGCCuGG-Cg -3'
miRNA:   3'- gaGCCGG---CGUUCG--CCGCUUGG-CCaGg -5'
14641 3' -59.8 NC_003521.1 + 116464 0.66 0.879088
Target:  5'- -gCGGCCGUGgugggacacguGGCGGCGAugaagaGcGUCCg -3'
miRNA:   3'- gaGCCGGCGU-----------UCGCCGCUugg---C-CAGG- -5'
14641 3' -59.8 NC_003521.1 + 92272 0.66 0.879088
Target:  5'- -gCuGCCGCuacCGGCcgGAGCCGGUCg -3'
miRNA:   3'- gaGcCGGCGuucGCCG--CUUGGCCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.