Results 1 - 20 of 311 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14641 | 3' | -59.8 | NC_003521.1 | + | 167667 | 0.66 | 0.885649 |
Target: 5'- --aGGUCGCAGGCcgaGGCGGcGCCGccgCCg -3' miRNA: 3'- gagCCGGCGUUCG---CCGCU-UGGCca-GG- -5' |
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14641 | 3' | -59.8 | NC_003521.1 | + | 140563 | 0.66 | 0.885649 |
Target: 5'- -gCGGCgGC-GGCGGCGAcaGCUcGUCg -3' miRNA: 3'- gaGCCGgCGuUCGCCGCU--UGGcCAGg -5' |
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14641 | 3' | -59.8 | NC_003521.1 | + | 50844 | 0.66 | 0.885649 |
Target: 5'- -aCGGCgGCuuuuuGagaaGGUGGACgGGUCCc -3' miRNA: 3'- gaGCCGgCGuu---Cg---CCGCUUGgCCAGG- -5' |
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14641 | 3' | -59.8 | NC_003521.1 | + | 52686 | 0.66 | 0.885649 |
Target: 5'- -cCGGCaGCGucGGCGGUGccAGCCGcUCCa -3' miRNA: 3'- gaGCCGgCGU--UCGCCGC--UUGGCcAGG- -5' |
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14641 | 3' | -59.8 | NC_003521.1 | + | 148559 | 0.66 | 0.885649 |
Target: 5'- -cCGGCCGguAGCGGC--AgCGGcacCCa -3' miRNA: 3'- gaGCCGGCguUCGCCGcuUgGCCa--GG- -5' |
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14641 | 3' | -59.8 | NC_003521.1 | + | 175445 | 0.66 | 0.885649 |
Target: 5'- gCUCGG-CGUAcgaucGGCGGCGcGCCGucUCCc -3' miRNA: 3'- -GAGCCgGCGU-----UCGCCGCuUGGCc-AGG- -5' |
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14641 | 3' | -59.8 | NC_003521.1 | + | 188781 | 0.66 | 0.885649 |
Target: 5'- uCUUGGCCGUGguguucacGGUGGUucuGAACCGGa-- -3' miRNA: 3'- -GAGCCGGCGU--------UCGCCG---CUUGGCCagg -5' |
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14641 | 3' | -59.8 | NC_003521.1 | + | 150569 | 0.66 | 0.885649 |
Target: 5'- -gUGGCgGC-GGCGGCG-GCgCGGcUCCu -3' miRNA: 3'- gaGCCGgCGuUCGCCGCuUG-GCC-AGG- -5' |
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14641 | 3' | -59.8 | NC_003521.1 | + | 213138 | 0.66 | 0.885649 |
Target: 5'- -gCGGCCGCA----GCGAACUgaagacguuGGUCCa -3' miRNA: 3'- gaGCCGGCGUucgcCGCUUGG---------CCAGG- -5' |
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14641 | 3' | -59.8 | NC_003521.1 | + | 198383 | 0.66 | 0.885649 |
Target: 5'- -aCGGCguugugGCGGGCGGCGAcuCCGG-Cg -3' miRNA: 3'- gaGCCGg-----CGUUCGCCGCUu-GGCCaGg -5' |
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14641 | 3' | -59.8 | NC_003521.1 | + | 125204 | 0.66 | 0.885649 |
Target: 5'- -aUGGCCGCcaugguGGCGGCGGcaACgCGGg-- -3' miRNA: 3'- gaGCCGGCGu-----UCGCCGCU--UG-GCCagg -5' |
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14641 | 3' | -59.8 | NC_003521.1 | + | 238540 | 0.66 | 0.885649 |
Target: 5'- gUCGGCCaGCGGGUagaGGUG-GCC-GUCCu -3' miRNA: 3'- gAGCCGG-CGUUCG---CCGCuUGGcCAGG- -5' |
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14641 | 3' | -59.8 | NC_003521.1 | + | 38313 | 0.66 | 0.885649 |
Target: 5'- gUCGGCCaGCGGGUagaGGUG-GCC-GUCCu -3' miRNA: 3'- gAGCCGG-CGUUCG---CCGCuUGGcCAGG- -5' |
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14641 | 3' | -59.8 | NC_003521.1 | + | 15527 | 0.66 | 0.885649 |
Target: 5'- -gCGGCgGCAuGUGGCGAacgcGCUGGg-- -3' miRNA: 3'- gaGCCGgCGUuCGCCGCU----UGGCCagg -5' |
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14641 | 3' | -59.8 | NC_003521.1 | + | 63871 | 0.66 | 0.879088 |
Target: 5'- -aCGGUgGacgAGGCGGCGcGCCGGgagCUg -3' miRNA: 3'- gaGCCGgCg--UUCGCCGCuUGGCCa--GG- -5' |
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14641 | 3' | -59.8 | NC_003521.1 | + | 98252 | 0.66 | 0.879088 |
Target: 5'- -gCGGCCacgGCGGGCacGGCGAGCCuGG-Cg -3' miRNA: 3'- gaGCCGG---CGUUCG--CCGCUUGG-CCaGg -5' |
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14641 | 3' | -59.8 | NC_003521.1 | + | 238461 | 0.66 | 0.879088 |
Target: 5'- -gCGGCCucgGCGGGCGGgGcggaGACgCGGcCCa -3' miRNA: 3'- gaGCCGG---CGUUCGCCgC----UUG-GCCaGG- -5' |
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14641 | 3' | -59.8 | NC_003521.1 | + | 92272 | 0.66 | 0.879088 |
Target: 5'- -gCuGCCGCuacCGGCcgGAGCCGGUCg -3' miRNA: 3'- gaGcCGGCGuucGCCG--CUUGGCCAGg -5' |
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14641 | 3' | -59.8 | NC_003521.1 | + | 116464 | 0.66 | 0.879088 |
Target: 5'- -gCGGCCGUGgugggacacguGGCGGCGAugaagaGcGUCCg -3' miRNA: 3'- gaGCCGGCGU-----------UCGCCGCUugg---C-CAGG- -5' |
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14641 | 3' | -59.8 | NC_003521.1 | + | 92126 | 0.66 | 0.879088 |
Target: 5'- -cCGGgUGCGguucgGGCGGCGGGgcuucCCGGcUCCu -3' miRNA: 3'- gaGCCgGCGU-----UCGCCGCUU-----GGCC-AGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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