miRNA display CGI


Results 1 - 20 of 311 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14641 3' -59.8 NC_003521.1 + 127668 0.85 0.092912
Target:  5'- uCUUGGCCGCGAGCaGGCG-GCgGGUCCa -3'
miRNA:   3'- -GAGCCGGCGUUCG-CCGCuUGgCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 27703 0.72 0.552139
Target:  5'- -gCGGCCGCAccacgccacacccAGCGcGuCGAGCCGcGUCUc -3'
miRNA:   3'- gaGCCGGCGU-------------UCGC-C-GCUUGGC-CAGG- -5'
14641 3' -59.8 NC_003521.1 + 15223 0.71 0.581415
Target:  5'- --gGGCUGCAGGCGGCcGAGCgcgaGG-CCg -3'
miRNA:   3'- gagCCGGCGUUCGCCG-CUUGg---CCaGG- -5'
14641 3' -59.8 NC_003521.1 + 140563 0.66 0.885649
Target:  5'- -gCGGCgGC-GGCGGCGAcaGCUcGUCg -3'
miRNA:   3'- gaGCCGgCGuUCGCCGCU--UGGcCAGg -5'
14641 3' -59.8 NC_003521.1 + 1438 0.75 0.387871
Target:  5'- aCUgGGCCGCGAGCuGCGccGCCGGUg- -3'
miRNA:   3'- -GAgCCGGCGUUCGcCGCu-UGGCCAgg -5'
14641 3' -59.8 NC_003521.1 + 136396 0.75 0.387871
Target:  5'- cCUCGGCCGCGGGCcGCGugugaggcagacAGCC-GUCCg -3'
miRNA:   3'- -GAGCCGGCGUUCGcCGC------------UUGGcCAGG- -5'
14641 3' -59.8 NC_003521.1 + 190541 0.74 0.453712
Target:  5'- -gCGGCgGCAgcAGCGGCGGACCcGG-CUg -3'
miRNA:   3'- gaGCCGgCGU--UCGCCGCUUGG-CCaGG- -5'
14641 3' -59.8 NC_003521.1 + 72983 0.73 0.479927
Target:  5'- -gCGGCCGCGGGgGGCcuGGCCGcUCCu -3'
miRNA:   3'- gaGCCGGCGUUCgCCGc-UUGGCcAGG- -5'
14641 3' -59.8 NC_003521.1 + 103673 0.73 0.497807
Target:  5'- -gCGGCCGCGgccauGGCgGGCGAGuCCGagcGUCCg -3'
miRNA:   3'- gaGCCGGCGU-----UCG-CCGCUU-GGC---CAGG- -5'
14641 3' -59.8 NC_003521.1 + 195540 0.72 0.534415
Target:  5'- -cUGGCC-C-AGCGGCGc-CCGGUCCa -3'
miRNA:   3'- gaGCCGGcGuUCGCCGCuuGGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 207603 0.73 0.506859
Target:  5'- -cCGGCUGCAagauccgucugGGCGGCucGCCGG-CCu -3'
miRNA:   3'- gaGCCGGCGU-----------UCGCCGcuUGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 170293 0.73 0.488829
Target:  5'- gUCGGCCGgcCGAGC-GCGAGgCGGUCa -3'
miRNA:   3'- gAGCCGGC--GUUCGcCGCUUgGCCAGg -5'
14641 3' -59.8 NC_003521.1 + 72 0.81 0.174727
Target:  5'- -gCGGCgGCGuGCGGCGGGCCGG-CCg -3'
miRNA:   3'- gaGCCGgCGUuCGCCGCUUGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 91997 0.72 0.525167
Target:  5'- cCUCGGCCGaGGGCaGGCGGucGCCGcgcacgaugaacGUCCg -3'
miRNA:   3'- -GAGCCGGCgUUCG-CCGCU--UGGC------------CAGG- -5'
14641 3' -59.8 NC_003521.1 + 240621 0.81 0.174727
Target:  5'- -gCGGCgGCGuGCGGCGGGCCGG-CCg -3'
miRNA:   3'- gaGCCGgCGUuCGCCGCUUGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 110340 0.73 0.488829
Target:  5'- -gCGGCCGCGcucGCGGUGuAGCUGGgCCa -3'
miRNA:   3'- gaGCCGGCGUu--CGCCGC-UUGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 117655 0.72 0.525167
Target:  5'- -cUGcGCCGCGAGaCGGUGcGCCGGcCCu -3'
miRNA:   3'- gaGC-CGGCGUUC-GCCGCuUGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 123572 0.72 0.553077
Target:  5'- -gCGGUgGCGggauGGCGGCGGcGCCGGgagCCg -3'
miRNA:   3'- gaGCCGgCGU----UCGCCGCU-UGGCCa--GG- -5'
14641 3' -59.8 NC_003521.1 + 98533 0.79 0.22571
Target:  5'- gCUgGGCCGCugcAGCGGCG-GCgGGUCCc -3'
miRNA:   3'- -GAgCCGGCGu--UCGCCGCuUGgCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 128393 0.75 0.395754
Target:  5'- cCUgGGCCGCcuGAGCGG-GcgUCGGUCCg -3'
miRNA:   3'- -GAgCCGGCG--UUCGCCgCuuGGCCAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.