miRNA display CGI


Results 21 - 40 of 311 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14641 3' -59.8 NC_003521.1 + 29761 0.71 0.629203
Target:  5'- gUCGucGCCGCGAGCGaCGAACgaGGUCa -3'
miRNA:   3'- gAGC--CGGCGUUCGCcGCUUGg-CCAGg -5'
14641 3' -59.8 NC_003521.1 + 15223 0.71 0.581415
Target:  5'- --gGGCUGCAGGCGGCcGAGCgcgaGG-CCg -3'
miRNA:   3'- gagCCGGCGUUCGCCG-CUUGg---CCaGG- -5'
14641 3' -59.8 NC_003521.1 + 170293 0.73 0.488829
Target:  5'- gUCGGCCGgcCGAGC-GCGAGgCGGUCa -3'
miRNA:   3'- gAGCCGGC--GUUCGcCGCUUgGCCAGg -5'
14641 3' -59.8 NC_003521.1 + 98533 0.79 0.22571
Target:  5'- gCUgGGCCGCugcAGCGGCG-GCgGGUCCc -3'
miRNA:   3'- -GAgCCGGCGu--UCGCCGCuUGgCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 129100 0.7 0.686529
Target:  5'- --aGGCUGUggGUGGCGuGCCGG-Cg -3'
miRNA:   3'- gagCCGGCGuuCGCCGCuUGGCCaGg -5'
14641 3' -59.8 NC_003521.1 + 170076 0.7 0.657948
Target:  5'- aUCGGCCGCGgcgcgcugcAGCuGGaCGAaguGCCGGuacaUCCg -3'
miRNA:   3'- gAGCCGGCGU---------UCG-CC-GCU---UGGCC----AGG- -5'
14641 3' -59.8 NC_003521.1 + 27703 0.72 0.552139
Target:  5'- -gCGGCCGCAccacgccacacccAGCGcGuCGAGCCGcGUCUc -3'
miRNA:   3'- gaGCCGGCGU-------------UCGC-C-GCUUGGC-CAGG- -5'
14641 3' -59.8 NC_003521.1 + 240621 0.81 0.174727
Target:  5'- -gCGGCgGCGuGCGGCGGGCCGG-CCg -3'
miRNA:   3'- gaGCCGgCGUuCGCCGCUUGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 204776 0.7 0.648376
Target:  5'- gUCGGCgGCGGGCuuacGGCGAAgaGGgCCa -3'
miRNA:   3'- gAGCCGgCGUUCG----CCGCUUggCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 72 0.81 0.174727
Target:  5'- -gCGGCgGCGuGCGGCGGGCCGG-CCg -3'
miRNA:   3'- gaGCCGgCGUuCGCCGCUUGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 123572 0.72 0.553077
Target:  5'- -gCGGUgGCGggauGGCGGCGGcGCCGGgagCCg -3'
miRNA:   3'- gaGCCGgCGU----UCGCCGCU-UGGCCa--GG- -5'
14641 3' -59.8 NC_003521.1 + 126413 0.71 0.629203
Target:  5'- uCUCGGCCcuGCGcgauGGCGGCcAGgCGGUCg -3'
miRNA:   3'- -GAGCCGG--CGU----UCGCCGcUUgGCCAGg -5'
14641 3' -59.8 NC_003521.1 + 91997 0.72 0.525167
Target:  5'- cCUCGGCCGaGGGCaGGCGGucGCCGcgcacgaugaacGUCCg -3'
miRNA:   3'- -GAGCCGGCgUUCG-CCGCU--UGGC------------CAGG- -5'
14641 3' -59.8 NC_003521.1 + 103673 0.73 0.497807
Target:  5'- -gCGGCCGCGgccauGGCgGGCGAGuCCGagcGUCCg -3'
miRNA:   3'- gaGCCGGCGU-----UCG-CCGCUU-GGC---CAGG- -5'
14641 3' -59.8 NC_003521.1 + 190541 0.74 0.453712
Target:  5'- -gCGGCgGCAgcAGCGGCGGACCcGG-CUg -3'
miRNA:   3'- gaGCCGgCGU--UCGCCGCUUGG-CCaGG- -5'
14641 3' -59.8 NC_003521.1 + 1438 0.75 0.387871
Target:  5'- aCUgGGCCGCGAGCuGCGccGCCGGUg- -3'
miRNA:   3'- -GAgCCGGCGUUCGcCGCu-UGGCCAgg -5'
14641 3' -59.8 NC_003521.1 + 195344 0.69 0.705397
Target:  5'- --aGGCUGCcguGGUGGUGGGCCGGg-- -3'
miRNA:   3'- gagCCGGCGu--UCGCCGCUUGGCCagg -5'
14641 3' -59.8 NC_003521.1 + 112762 0.7 0.686529
Target:  5'- aUgGGCgGCAucGGCGGCGcgUCGG-CCa -3'
miRNA:   3'- gAgCCGgCGU--UCGCCGCuuGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 7655 0.7 0.677032
Target:  5'- -gCGGCCGCcacGGCGGCGcgGACagCGGUgCCc -3'
miRNA:   3'- gaGCCGGCGu--UCGCCGC--UUG--GCCA-GG- -5'
14641 3' -59.8 NC_003521.1 + 123713 0.7 0.667502
Target:  5'- -gCGGCgGCuGAGCGGCGGaggcgGCCucGUCCg -3'
miRNA:   3'- gaGCCGgCG-UUCGCCGCU-----UGGc-CAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.