Results 21 - 40 of 295 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14644 | 5' | -64.3 | NC_003521.1 | + | 122721 | 0.73 | 0.292132 |
Target: 5'- aGGCGGUcguGGUCGUGGGCGacggCGCCgCCGa -3' miRNA: 3'- -CCGUCG---CCAGCGUCCGCg---GCGGaGGC- -5' |
|||||||
14644 | 5' | -64.3 | NC_003521.1 | + | 172386 | 0.74 | 0.273909 |
Target: 5'- cGGCAcGCGGUUGagGGGCGCCGgCggagCCGu -3' miRNA: 3'- -CCGU-CGCCAGCg-UCCGCGGCgGa---GGC- -5' |
|||||||
14644 | 5' | -64.3 | NC_003521.1 | + | 123584 | 0.76 | 0.205347 |
Target: 5'- uGGCGGCGG-CGcCGGGaGCCGCCgcggCCGu -3' miRNA: 3'- -CCGUCGCCaGC-GUCCgCGGCGGa---GGC- -5' |
|||||||
14644 | 5' | -64.3 | NC_003521.1 | + | 60748 | 0.79 | 0.128988 |
Target: 5'- cGGCGGCGGcagucgcCGCGGGagaaucccCGCCGCCUCCu -3' miRNA: 3'- -CCGUCGCCa------GCGUCC--------GCGGCGGAGGc -5' |
|||||||
14644 | 5' | -64.3 | NC_003521.1 | + | 169316 | 0.72 | 0.352424 |
Target: 5'- cGGCGuCGGUCGCA-GCGUCGCggCCGg -3' miRNA: 3'- -CCGUcGCCAGCGUcCGCGGCGgaGGC- -5' |
|||||||
14644 | 5' | -64.3 | NC_003521.1 | + | 55918 | 0.72 | 0.323909 |
Target: 5'- cGGCGGCGGcaaCGgGGGUGCCagcgggguaugagGCCUCUGu -3' miRNA: 3'- -CCGUCGCCa--GCgUCCGCGG-------------CGGAGGC- -5' |
|||||||
14644 | 5' | -64.3 | NC_003521.1 | + | 235285 | 0.74 | 0.26804 |
Target: 5'- uGGCGGCGGcCGCGccGGCuGCCGUCaCCGu -3' miRNA: 3'- -CCGUCGCCaGCGU--CCG-CGGCGGaGGC- -5' |
|||||||
14644 | 5' | -64.3 | NC_003521.1 | + | 44077 | 0.8 | 0.101515 |
Target: 5'- gGGCAGCagacGGU-GCAGGCGCCGCCgCCa -3' miRNA: 3'- -CCGUCG----CCAgCGUCCGCGGCGGaGGc -5' |
|||||||
14644 | 5' | -64.3 | NC_003521.1 | + | 186658 | 0.73 | 0.3048 |
Target: 5'- cGCGGCGGUgGCggAGGCgGCgGCCUCUc -3' miRNA: 3'- cCGUCGCCAgCG--UCCG-CGgCGGAGGc -5' |
|||||||
14644 | 5' | -64.3 | NC_003521.1 | + | 102772 | 0.83 | 0.060773 |
Target: 5'- cGCGGCGGUCGCGGGCGacccaCGCC-CCGu -3' miRNA: 3'- cCGUCGCCAGCGUCCGCg----GCGGaGGC- -5' |
|||||||
14644 | 5' | -64.3 | NC_003521.1 | + | 167651 | 0.74 | 0.273909 |
Target: 5'- cGGcCAGCuccgcgccaGGUCGCAggccgaggcGGCGCCGCCgCCGc -3' miRNA: 3'- -CC-GUCG---------CCAGCGU---------CCGCGGCGGaGGC- -5' |
|||||||
14644 | 5' | -64.3 | NC_003521.1 | + | 204735 | 0.73 | 0.292132 |
Target: 5'- uGGCgagGGUGGUgaUGgAGGCGCCGCCgCCGc -3' miRNA: 3'- -CCG---UCGCCA--GCgUCCGCGGCGGaGGC- -5' |
|||||||
14644 | 5' | -64.3 | NC_003521.1 | + | 223741 | 0.74 | 0.251043 |
Target: 5'- cGGUGGCGGgaaCGUGGGuCGCCGCCagCGg -3' miRNA: 3'- -CCGUCGCCa--GCGUCC-GCGGCGGagGC- -5' |
|||||||
14644 | 5' | -64.3 | NC_003521.1 | + | 102352 | 0.75 | 0.21972 |
Target: 5'- gGGCGGCaGGUgGCAgauguGGCGCCGCCggCGa -3' miRNA: 3'- -CCGUCG-CCAgCGU-----CCGCGGCGGagGC- -5' |
|||||||
14644 | 5' | -64.3 | NC_003521.1 | + | 180108 | 0.77 | 0.167032 |
Target: 5'- gGGCAGCGG-CGUGGugcgacccGCGCCGCCcCCGg -3' miRNA: 3'- -CCGUCGCCaGCGUC--------CGCGGCGGaGGC- -5' |
|||||||
14644 | 5' | -64.3 | NC_003521.1 | + | 94946 | 0.78 | 0.145174 |
Target: 5'- cGGCGGCcucGUCGUcGGCGCCGCCcgCCGc -3' miRNA: 3'- -CCGUCGc--CAGCGuCCGCGGCGGa-GGC- -5' |
|||||||
14644 | 5' | -64.3 | NC_003521.1 | + | 90156 | 0.71 | 0.366965 |
Target: 5'- aGCAGCGGcgccgcCGCcGGagaGCCGCCUUCGu -3' miRNA: 3'- cCGUCGCCa-----GCGuCCg--CGGCGGAGGC- -5' |
|||||||
14644 | 5' | -64.3 | NC_003521.1 | + | 39464 | 0.72 | 0.359643 |
Target: 5'- cGGCAGCGGuUCGUGucccGuCGCCGCCUCg- -3' miRNA: 3'- -CCGUCGCC-AGCGUc---C-GCGGCGGAGgc -5' |
|||||||
14644 | 5' | -64.3 | NC_003521.1 | + | 13859 | 0.72 | 0.345308 |
Target: 5'- cGCGGgGGUCucuGCGGGCGgCGCCgCCa -3' miRNA: 3'- cCGUCgCCAG---CGUCCGCgGCGGaGGc -5' |
|||||||
14644 | 5' | -64.3 | NC_003521.1 | + | 181207 | 0.72 | 0.324584 |
Target: 5'- aGCcGCGGUCGCcgccGGgGCCGCCgCCa -3' miRNA: 3'- cCGuCGCCAGCGu---CCgCGGCGGaGGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home