miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14644 5' -64.3 NC_003521.1 + 40233 1.1 0.000825
Target:  5'- gGGCAGCGGUCGCAGGCGCCGCCUCCGg -3'
miRNA:   3'- -CCGUCGCCAGCGUCCGCGGCGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 235285 0.74 0.26804
Target:  5'- uGGCGGCGGcCGCGccGGCuGCCGUCaCCGu -3'
miRNA:   3'- -CCGUCGCCaGCGU--CCG-CGGCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 172386 0.74 0.273909
Target:  5'- cGGCAcGCGGUUGagGGGCGCCGgCggagCCGu -3'
miRNA:   3'- -CCGU-CGCCAGCg-UCCGCGGCgGa---GGC- -5'
14644 5' -64.3 NC_003521.1 + 52687 0.66 0.690689
Target:  5'- cGGCAGC-GUCgGC-GGUGCCaGCCgcUCCa -3'
miRNA:   3'- -CCGUCGcCAG-CGuCCGCGG-CGG--AGGc -5'
14644 5' -64.3 NC_003521.1 + 94946 0.78 0.145174
Target:  5'- cGGCGGCcucGUCGUcGGCGCCGCCcgCCGc -3'
miRNA:   3'- -CCGUCGc--CAGCGuCCGCGGCGGa-GGC- -5'
14644 5' -64.3 NC_003521.1 + 17016 0.78 0.148627
Target:  5'- uGGCGGCGG-CGCAGGC-CCGUCgUCUGg -3'
miRNA:   3'- -CCGUCGCCaGCGUCCGcGGCGG-AGGC- -5'
14644 5' -64.3 NC_003521.1 + 180108 0.77 0.167032
Target:  5'- gGGCAGCGG-CGUGGugcgacccGCGCCGCCcCCGg -3'
miRNA:   3'- -CCGUCGCCaGCGUC--------CGCGGCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 77036 0.76 0.191795
Target:  5'- aGGcCGGCGGU-GguGGCGCCGCUaCCGu -3'
miRNA:   3'- -CC-GUCGCCAgCguCCGCGGCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 102352 0.75 0.21972
Target:  5'- gGGCGGCaGGUgGCAgauguGGCGCCGCCggCGa -3'
miRNA:   3'- -CCGUCG-CCAgCGU-----CCGCGGCGGagGC- -5'
14644 5' -64.3 NC_003521.1 + 77718 0.74 0.26804
Target:  5'- cGGCGGUGGUCGU-GGCGCUGgCgcCCGa -3'
miRNA:   3'- -CCGUCGCCAGCGuCCGCGGCgGa-GGC- -5'
14644 5' -64.3 NC_003521.1 + 146728 0.74 0.251043
Target:  5'- gGGgAGgGGUUGUuGcGCGUCGCCUCCGg -3'
miRNA:   3'- -CCgUCgCCAGCGuC-CGCGGCGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 123584 0.76 0.205347
Target:  5'- uGGCGGCGG-CGcCGGGaGCCGCCgcggCCGu -3'
miRNA:   3'- -CCGUCGCCaGC-GUCCgCGGCGGa---GGC- -5'
14644 5' -64.3 NC_003521.1 + 102772 0.83 0.060773
Target:  5'- cGCGGCGGUCGCGGGCGacccaCGCC-CCGu -3'
miRNA:   3'- cCGUCGCCAGCGUCCGCg----GCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 223741 0.74 0.251043
Target:  5'- cGGUGGCGGgaaCGUGGGuCGCCGCCagCGg -3'
miRNA:   3'- -CCGUCGCCa--GCGUCC-GCGGCGGagGC- -5'
14644 5' -64.3 NC_003521.1 + 44077 0.8 0.101515
Target:  5'- gGGCAGCagacGGU-GCAGGCGCCGCCgCCa -3'
miRNA:   3'- -CCGUCG----CCAgCGUCCGCGGCGGaGGc -5'
14644 5' -64.3 NC_003521.1 + 140124 0.76 0.196223
Target:  5'- -uCAGCGGcCGC-GGCGgCGCCUCCGc -3'
miRNA:   3'- ccGUCGCCaGCGuCCGCgGCGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 118623 0.74 0.26804
Target:  5'- aGGCAGCauggaGUCGCgaGGGCGUCGCCagcCCGa -3'
miRNA:   3'- -CCGUCGc----CAGCG--UCCGCGGCGGa--GGC- -5'
14644 5' -64.3 NC_003521.1 + 167651 0.74 0.273909
Target:  5'- cGGcCAGCuccgcgccaGGUCGCAggccgaggcGGCGCCGCCgCCGc -3'
miRNA:   3'- -CC-GUCG---------CCAGCGU---------CCGCGGCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 60748 0.79 0.128988
Target:  5'- cGGCGGCGGcagucgcCGCGGGagaaucccCGCCGCCUCCu -3'
miRNA:   3'- -CCGUCGCCa------GCGUCC--------GCGGCGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 207943 0.78 0.152154
Target:  5'- cGGCAGCaccGGcggCGCGGGCGCCaaaccgaucgGCCUCCa -3'
miRNA:   3'- -CCGUCG---CCa--GCGUCCGCGG----------CGGAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.