miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1472 3' -58.5 NC_001335.1 + 19924 0.66 0.544871
Target:  5'- uGGgGUCAucAGGCAGCguccacaagcuCGUCUCGA-GCc -3'
miRNA:   3'- gCCgUAGU--UCCGUCG-----------GCGGAGCUgCG- -5'
1472 3' -58.5 NC_001335.1 + 26227 0.66 0.544871
Target:  5'- aGGCccCGAGGCgcggguucuGGCCGCgagacagguacUUCGGCGUg -3'
miRNA:   3'- gCCGuaGUUCCG---------UCGGCG-----------GAGCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 24346 0.66 0.544871
Target:  5'- uGGCGUCuGAGGC--CCGCgaCGAgGCu -3'
miRNA:   3'- gCCGUAG-UUCCGucGGCGgaGCUgCG- -5'
1472 3' -58.5 NC_001335.1 + 28933 0.66 0.544871
Target:  5'- gCGaGCuGUCAccGGCAGCCGCCggcccaucgcgUUGACGa -3'
miRNA:   3'- -GC-CG-UAGUu-CCGUCGGCGG-----------AGCUGCg -5'
1472 3' -58.5 NC_001335.1 + 16128 0.66 0.544871
Target:  5'- uGGCAagUCGuuccuGGGCcucacacgAGCCGCCUgGAUagGCg -3'
miRNA:   3'- gCCGU--AGU-----UCCG--------UCGGCGGAgCUG--CG- -5'
1472 3' -58.5 NC_001335.1 + 27174 0.66 0.543818
Target:  5'- uGGCggCAAGGCcgaugauGGCUGCUgCGAUGg -3'
miRNA:   3'- gCCGuaGUUCCG-------UCGGCGGaGCUGCg -5'
1472 3' -58.5 NC_001335.1 + 22233 0.66 0.534376
Target:  5'- uCGGCGaacuUCAGGaacaGCgGGCCGUCUUGgaGCGCg -3'
miRNA:   3'- -GCCGU----AGUUC----CG-UCGGCGGAGC--UGCG- -5'
1472 3' -58.5 NC_001335.1 + 10197 0.66 0.528113
Target:  5'- uGGCcgCAguucgcgaaguggagAuGGCAGCaCGCCgacagaucaUCGGCGCu -3'
miRNA:   3'- gCCGuaGU---------------U-CCGUCG-GCGG---------AGCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 1667 0.66 0.523953
Target:  5'- gGGUGUCGccaccGGCugagaAGCCGaCCUCGAacaGCg -3'
miRNA:   3'- gCCGUAGUu----CCG-----UCGGC-GGAGCUg--CG- -5'
1472 3' -58.5 NC_001335.1 + 16415 0.66 0.523953
Target:  5'- uGGaaCGUCGAGGagaCAGCgGCCUUGAcCGUc -3'
miRNA:   3'- gCC--GUAGUUCC---GUCGgCGGAGCU-GCG- -5'
1472 3' -58.5 NC_001335.1 + 2532 0.66 0.513609
Target:  5'- aCGGCAagAAauCAGCCGCCgagGGCGUa -3'
miRNA:   3'- -GCCGUagUUccGUCGGCGGag-CUGCG- -5'
1472 3' -58.5 NC_001335.1 + 25128 0.66 0.513609
Target:  5'- uGGCG-Cu-GGCGGCUGCCUUcuuCGCc -3'
miRNA:   3'- gCCGUaGuuCCGUCGGCGGAGcu-GCG- -5'
1472 3' -58.5 NC_001335.1 + 31670 0.66 0.513609
Target:  5'- uCGGCAUCc--GCGGCCucgugccagcggGCCUUGAUGa -3'
miRNA:   3'- -GCCGUAGuucCGUCGG------------CGGAGCUGCg -5'
1472 3' -58.5 NC_001335.1 + 5973 0.66 0.513609
Target:  5'- gCGGUAUCGgcAGGCAGaCCagGCC-CGA-GCg -3'
miRNA:   3'- -GCCGUAGU--UCCGUC-GG--CGGaGCUgCG- -5'
1472 3' -58.5 NC_001335.1 + 1243 0.66 0.50335
Target:  5'- aGGCGUCAccgguGGCGGCggaaguggaGCCggCGGCGg -3'
miRNA:   3'- gCCGUAGUu----CCGUCGg--------CGGa-GCUGCg -5'
1472 3' -58.5 NC_001335.1 + 51544 0.67 0.493181
Target:  5'- cCGGUgagAUCAggcGGGUAGCgcauuaCGCCagCGGCGCu -3'
miRNA:   3'- -GCCG---UAGU---UCCGUCG------GCGGa-GCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 12544 0.67 0.492169
Target:  5'- gCGGUuucCGGGGCaccuuccAGCCGCCa-GugGCg -3'
miRNA:   3'- -GCCGua-GUUCCG-------UCGGCGGagCugCG- -5'
1472 3' -58.5 NC_001335.1 + 24909 0.67 0.483107
Target:  5'- uCGaGCAg-AAGGCAGCCGaugagcgCGACGUa -3'
miRNA:   3'- -GC-CGUagUUCCGUCGGCgga----GCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 42325 0.67 0.480103
Target:  5'- aGGCGUCGugaaucggccgaccGGcGCgAGCCGCgugcguCUCGGCGUc -3'
miRNA:   3'- gCCGUAGU--------------UC-CG-UCGGCG------GAGCUGCG- -5'
1472 3' -58.5 NC_001335.1 + 11489 0.67 0.47711
Target:  5'- gGGC-UCGAGGUAGCCcucgaacaucgagucGCCggUCuGCGCg -3'
miRNA:   3'- gCCGuAGUUCCGUCGG---------------CGG--AGcUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.