miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1499 5' -56.6 NC_001335.1 + 24960 0.66 0.63943
Target:  5'- cCAUC-CCGGcCCACcACGCACgcaccaGAGCu -3'
miRNA:   3'- uGUGGcGGCC-GGUGuUGUGUGa-----CUCG- -5'
1499 5' -56.6 NC_001335.1 + 10752 0.66 0.628435
Target:  5'- uCGCCGCgugcuaGGCgGCGucggaGCGCGUUGAGCg -3'
miRNA:   3'- uGUGGCGg-----CCGgUGU-----UGUGUGACUCG- -5'
1499 5' -56.6 NC_001335.1 + 27421 0.66 0.628435
Target:  5'- --uCCGCCGGCUACAcgAgGCAaucgaUGAGg -3'
miRNA:   3'- uguGGCGGCCGGUGU--UgUGUg----ACUCg -5'
1499 5' -56.6 NC_001335.1 + 48404 0.66 0.628435
Target:  5'- cCACCGCagCGGCCACGuCcUGCUG-GCc -3'
miRNA:   3'- uGUGGCG--GCCGGUGUuGuGUGACuCG- -5'
1499 5' -56.6 NC_001335.1 + 13783 0.66 0.628435
Target:  5'- gACGgCGCgUGGCCGaacucaagcgcCAACGCGUUGGGCg -3'
miRNA:   3'- -UGUgGCG-GCCGGU-----------GUUGUGUGACUCG- -5'
1499 5' -56.6 NC_001335.1 + 41223 0.66 0.625137
Target:  5'- aACGCU-CUGGCCGCGuaugACGCGCUGuacgaggacuucccAGCg -3'
miRNA:   3'- -UGUGGcGGCCGGUGU----UGUGUGAC--------------UCG- -5'
1499 5' -56.6 NC_001335.1 + 37539 0.66 0.617443
Target:  5'- uACACCGCauCGGagACuGgACugUGAGCa -3'
miRNA:   3'- -UGUGGCG--GCCggUGuUgUGugACUCG- -5'
1499 5' -56.6 NC_001335.1 + 2179 0.66 0.617443
Target:  5'- -gGCUGUCGGCCACGAagug--GGGCg -3'
miRNA:   3'- ugUGGCGGCCGGUGUUgugugaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 37909 0.66 0.617443
Target:  5'- uCGCCGUCGGCCAgGAguuCACguuGCg -3'
miRNA:   3'- uGUGGCGGCCGGUgUUgu-GUGacuCG- -5'
1499 5' -56.6 NC_001335.1 + 47390 0.66 0.606465
Target:  5'- uCACCGUCGucguugcauucGCUACAGCGguCgGAGCg -3'
miRNA:   3'- uGUGGCGGC-----------CGGUGUUGUguGaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 41485 0.66 0.606465
Target:  5'- uCugCGCCGGCCcCGGCAC-C-GGGa -3'
miRNA:   3'- uGugGCGGCCGGuGUUGUGuGaCUCg -5'
1499 5' -56.6 NC_001335.1 + 9669 0.66 0.606465
Target:  5'- gGCugCGUCGGCCuuGGC-CGCguagguggGAGUg -3'
miRNA:   3'- -UGugGCGGCCGGugUUGuGUGa-------CUCG- -5'
1499 5' -56.6 NC_001335.1 + 29041 0.66 0.606465
Target:  5'- -gGCCGCaaCGGCUACAucgucaACGCGaUGGGCc -3'
miRNA:   3'- ugUGGCG--GCCGGUGU------UGUGUgACUCG- -5'
1499 5' -56.6 NC_001335.1 + 13803 0.66 0.595508
Target:  5'- gGCACCGUCucauaaggaGGUCACAugGCGCgaauGCc -3'
miRNA:   3'- -UGUGGCGG---------CCGGUGUugUGUGacu-CG- -5'
1499 5' -56.6 NC_001335.1 + 16283 0.66 0.595508
Target:  5'- -gACCGgccagcagaCCGGCCACGAUGCcgaccaGCgGAGCu -3'
miRNA:   3'- ugUGGC---------GGCCGGUGUUGUG------UGaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 656 0.66 0.584583
Target:  5'- cGCGCCGCCguucuuGGCgGCGuaauCGCGgUGAcGCg -3'
miRNA:   3'- -UGUGGCGG------CCGgUGUu---GUGUgACU-CG- -5'
1499 5' -56.6 NC_001335.1 + 37307 0.67 0.573696
Target:  5'- gACAUCGCCGGUUAC-GCAgGCguucugGAGa -3'
miRNA:   3'- -UGUGGCGGCCGGUGuUGUgUGa-----CUCg -5'
1499 5' -56.6 NC_001335.1 + 37755 0.67 0.562858
Target:  5'- uACACCcgucCCGGCUGCAAgcCAUGC-GAGCg -3'
miRNA:   3'- -UGUGGc---GGCCGGUGUU--GUGUGaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 22980 0.67 0.562858
Target:  5'- cACGCCGUCGGUgAUgccGACGguCgGAGCg -3'
miRNA:   3'- -UGUGGCGGCCGgUG---UUGUguGaCUCG- -5'
1499 5' -56.6 NC_001335.1 + 17374 0.67 0.562858
Target:  5'- cCAUCGgCGGCgCGCucaucGGCGCGCUG-GCg -3'
miRNA:   3'- uGUGGCgGCCG-GUG-----UUGUGUGACuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.