miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1507 5' -50.9 NC_001335.1 + 7161 0.66 0.926661
Target:  5'- uUCGUCugguCCugGCuGAcgGCCGCGACGGUg -3'
miRNA:   3'- -GGUAGu---GGuaCGuCU--UGGUGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 35533 0.66 0.926661
Target:  5'- aCAUCGCgauCAUGCucaucgAGAACCccgagcugcGCGAUGGCu -3'
miRNA:   3'- gGUAGUG---GUACG------UCUUGG---------UGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 5580 0.66 0.926661
Target:  5'- cCCAgaUCAggacgaugcCCA-GCAGuGCCGgGGCGGCg -3'
miRNA:   3'- -GGU--AGU---------GGUaCGUCuUGGUgCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 50097 0.66 0.926661
Target:  5'- gCGUCAcgcaacaguucCCAguugugcaGCAGGACCGagcUGACAGCc -3'
miRNA:   3'- gGUAGU-----------GGUa-------CGUCUUGGU---GCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 9850 0.66 0.926661
Target:  5'- gCGUgACC--GCAGAGgaguaCGCGGCGGCu -3'
miRNA:   3'- gGUAgUGGuaCGUCUUg----GUGCUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 45977 0.66 0.920608
Target:  5'- aCCAaCGCUuucUGCAGAAUCGgGACuuGCc -3'
miRNA:   3'- -GGUaGUGGu--ACGUCUUGGUgCUGu-CG- -5'
1507 5' -50.9 NC_001335.1 + 3101 0.66 0.920608
Target:  5'- gCC-UCGCCAagGC-GAGCgGCGGgAGCu -3'
miRNA:   3'- -GGuAGUGGUa-CGuCUUGgUGCUgUCG- -5'
1507 5' -50.9 NC_001335.1 + 33465 0.66 0.920608
Target:  5'- aCAUgGCCGagcUGCGGAGgUugG-CAGCc -3'
miRNA:   3'- gGUAgUGGU---ACGUCUUgGugCuGUCG- -5'
1507 5' -50.9 NC_001335.1 + 16496 0.66 0.920608
Target:  5'- cCCGagGCCAcguucUGCAGGuugggggugAUCGCGGuCAGCa -3'
miRNA:   3'- -GGUagUGGU-----ACGUCU---------UGGUGCU-GUCG- -5'
1507 5' -50.9 NC_001335.1 + 33932 0.66 0.920608
Target:  5'- aCCGUgggaGCCGUGCAaccucGGCCACaucaaccuGGCGGCg -3'
miRNA:   3'- -GGUAg---UGGUACGUc----UUGGUG--------CUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 49013 0.66 0.920608
Target:  5'- aCAUCACCuggGaCGGcgUgGCGugGGCa -3'
miRNA:   3'- gGUAGUGGua-C-GUCuuGgUGCugUCG- -5'
1507 5' -50.9 NC_001335.1 + 48526 0.66 0.914261
Target:  5'- cUCGUUACCGUGCAGGugauACCuguauuucagauAC-ACGGCu -3'
miRNA:   3'- -GGUAGUGGUACGUCU----UGG------------UGcUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 37455 0.66 0.907623
Target:  5'- ---aCGCCAaGgAGAACCACGAacGCa -3'
miRNA:   3'- gguaGUGGUaCgUCUUGGUGCUguCG- -5'
1507 5' -50.9 NC_001335.1 + 45730 0.66 0.907623
Target:  5'- gCCAguUCAUCGUugGCgAGAucaGCCACGACgAGUa -3'
miRNA:   3'- -GGU--AGUGGUA--CG-UCU---UGGUGCUG-UCG- -5'
1507 5' -50.9 NC_001335.1 + 26039 0.66 0.907623
Target:  5'- aUCAUCGCgAUGguGAucGCUGCGAUcccuccgcucuGGCu -3'
miRNA:   3'- -GGUAGUGgUACguCU--UGGUGCUG-----------UCG- -5'
1507 5' -50.9 NC_001335.1 + 23617 0.66 0.900697
Target:  5'- gCCugcguUCACCccgGUGCuGAccacguucGCCACGGuCGGCa -3'
miRNA:   3'- -GGu----AGUGG---UACGuCU--------UGGUGCU-GUCG- -5'
1507 5' -50.9 NC_001335.1 + 27385 0.66 0.900697
Target:  5'- ---gCACCGUGCAGA-CCGCauaugaaguCGGCg -3'
miRNA:   3'- gguaGUGGUACGUCUuGGUGcu-------GUCG- -5'
1507 5' -50.9 NC_001335.1 + 26951 0.66 0.900697
Target:  5'- gUCAUCACCcaGgAGAACCgagACGACcuccaGGCg -3'
miRNA:   3'- -GGUAGUGGuaCgUCUUGG---UGCUG-----UCG- -5'
1507 5' -50.9 NC_001335.1 + 30585 0.66 0.899988
Target:  5'- uCCGUUcgaagcgGCCAUGCAGcaGGCCAUcaaggaGAUGGCc -3'
miRNA:   3'- -GGUAG-------UGGUACGUC--UUGGUG------CUGUCG- -5'
1507 5' -50.9 NC_001335.1 + 45549 0.66 0.896403
Target:  5'- gCCAUCAaggaucUGCGGAagugguuccgcgccgACCACGAcCAGUg -3'
miRNA:   3'- -GGUAGUggu---ACGUCU---------------UGGUGCU-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.