miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1508 3' -56 NC_001335.1 + 7796 0.66 0.704144
Target:  5'- uCCugCGGUGAGagccacgaguccucaGCGGCGuuuaCCUgauucaggaacuUGCGCCg -3'
miRNA:   3'- -GGugGUCGCUC---------------UGUCGC----GGA------------AUGCGG- -5'
1508 3' -56 NC_001335.1 + 11947 0.66 0.699858
Target:  5'- aCCAaCAGCGAcagggcguuGACGGCGaCC--GCGUCg -3'
miRNA:   3'- -GGUgGUCGCU---------CUGUCGC-GGaaUGCGG- -5'
1508 3' -56 NC_001335.1 + 47003 0.66 0.699858
Target:  5'- gCGCCAGgcCGaAGACGugGCCggUACGCCg -3'
miRNA:   3'- gGUGGUC--GC-UCUGUcgCGGa-AUGCGG- -5'
1508 3' -56 NC_001335.1 + 8392 0.66 0.699858
Target:  5'- cUCGCCcgaacGCGAgGACAGCGCagacugcaGCGUCg -3'
miRNA:   3'- -GGUGGu----CGCU-CUGUCGCGgaa-----UGCGG- -5'
1508 3' -56 NC_001335.1 + 24807 0.66 0.699858
Target:  5'- uCCucaGGCGu--CAGCGCCUcUACGUCg -3'
miRNA:   3'- -GGuggUCGCucuGUCGCGGA-AUGCGG- -5'
1508 3' -56 NC_001335.1 + 1660 0.66 0.698785
Target:  5'- gCCACCGGCuGAGAagccgaccucgaaCAGCGaCUUGaGUCg -3'
miRNA:   3'- -GGUGGUCG-CUCU-------------GUCGCgGAAUgCGG- -5'
1508 3' -56 NC_001335.1 + 46210 0.66 0.689099
Target:  5'- cCCGCuCuGUGAGuaccggagcGCAGCGCacauCGCCg -3'
miRNA:   3'- -GGUG-GuCGCUC---------UGUCGCGgaauGCGG- -5'
1508 3' -56 NC_001335.1 + 21267 0.66 0.689099
Target:  5'- aCGCCAGCaaucaucggGAGAUuGCGUa--GCGCCc -3'
miRNA:   3'- gGUGGUCG---------CUCUGuCGCGgaaUGCGG- -5'
1508 3' -56 NC_001335.1 + 33069 0.66 0.689099
Target:  5'- -aGCCGuCGaAGACGGUGUCgaugaagagUGCGCCa -3'
miRNA:   3'- ggUGGUcGC-UCUGUCGCGGa--------AUGCGG- -5'
1508 3' -56 NC_001335.1 + 30167 0.66 0.689099
Target:  5'- gCACCAuGCGcuuGAgAGCGCCgaugGCGauCCg -3'
miRNA:   3'- gGUGGU-CGCu--CUgUCGCGGaa--UGC--GG- -5'
1508 3' -56 NC_001335.1 + 757 0.66 0.678287
Target:  5'- --uCCGGCGuGaguGCAGCGCCgaccugcuUUACGCg -3'
miRNA:   3'- gguGGUCGCuC---UGUCGCGG--------AAUGCGg -5'
1508 3' -56 NC_001335.1 + 20341 0.66 0.678287
Target:  5'- gCACCAGCccGAUAGCaCCccACGUCg -3'
miRNA:   3'- gGUGGUCGcuCUGUCGcGGaaUGCGG- -5'
1508 3' -56 NC_001335.1 + 46477 0.66 0.678287
Target:  5'- uCgGCCGGCGGGGgAGCGUUgg-UGCUc -3'
miRNA:   3'- -GgUGGUCGCUCUgUCGCGGaauGCGG- -5'
1508 3' -56 NC_001335.1 + 369 0.66 0.678287
Target:  5'- -gGCCGGUcuuuAGAUgAGCGCCUggugGCGCUc -3'
miRNA:   3'- ggUGGUCGc---UCUG-UCGCGGAa---UGCGG- -5'
1508 3' -56 NC_001335.1 + 46248 0.66 0.667431
Target:  5'- cCCGCCAGCGcGugGuucauCGCCgcguUGCgGCCg -3'
miRNA:   3'- -GGUGGUCGCuCugUc----GCGGa---AUG-CGG- -5'
1508 3' -56 NC_001335.1 + 17404 0.66 0.656543
Target:  5'- gCGCCAGCaacgcuGAcCAGaGCC-UGCGCCa -3'
miRNA:   3'- gGUGGUCGcu----CU-GUCgCGGaAUGCGG- -5'
1508 3' -56 NC_001335.1 + 7200 0.66 0.656543
Target:  5'- -aGCCGGUggccguauuGAGGCAGCGaCCUcgaGCCc -3'
miRNA:   3'- ggUGGUCG---------CUCUGUCGC-GGAaugCGG- -5'
1508 3' -56 NC_001335.1 + 37237 0.67 0.63471
Target:  5'- cUCGCCAGUGGGACAccuUGCUggACGUUc -3'
miRNA:   3'- -GGUGGUCGCUCUGUc--GCGGaaUGCGG- -5'
1508 3' -56 NC_001335.1 + 13954 0.67 0.623784
Target:  5'- uCCGCCgcauaGGCGGGACAGgaaccccaaCGCaccgACGCUg -3'
miRNA:   3'- -GGUGG-----UCGCUCUGUC---------GCGgaa-UGCGG- -5'
1508 3' -56 NC_001335.1 + 10298 0.67 0.623784
Target:  5'- gCCACCGggcGCGAaACAuGCGCCUggugucugAUGCUc -3'
miRNA:   3'- -GGUGGU---CGCUcUGU-CGCGGAa-------UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.