miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15659 3' -48.5 NC_004065.1 + 219215 0.65 0.999955
Target:  5'- aCUGCGGCAAuuAGuacaccgcucgucACGaCACCUGGuucuGCGa -3'
miRNA:   3'- aGAUGCCGUU--UU-------------UGC-GUGGGCUu---UGC- -5'
15659 3' -48.5 NC_004065.1 + 68435 0.65 0.999952
Target:  5'- --aGCGGCGGGGccgacagcuccgucGCGCGCgCCGccGCGa -3'
miRNA:   3'- agaUGCCGUUUU--------------UGCGUG-GGCuuUGC- -5'
15659 3' -48.5 NC_004065.1 + 97436 0.66 0.999942
Target:  5'- --aGCGGUAGGAAUccgugGCGCCCGuguCGu -3'
miRNA:   3'- agaUGCCGUUUUUG-----CGUGGGCuuuGC- -5'
15659 3' -48.5 NC_004065.1 + 50220 0.66 0.999942
Target:  5'- -gUGCGGUuguccuuGCGCugCaCGAGACa -3'
miRNA:   3'- agAUGCCGuuuu---UGCGugG-GCUUUGc -5'
15659 3' -48.5 NC_004065.1 + 50211 0.66 0.999942
Target:  5'- uUCUcCGGCAAgggcAGAUGuCAUCCGGAcggucGCGg -3'
miRNA:   3'- -AGAuGCCGUU----UUUGC-GUGGGCUU-----UGC- -5'
15659 3' -48.5 NC_004065.1 + 101134 0.66 0.999942
Target:  5'- --cGCGGCGgaggAGAAC-UACCUGggGCGc -3'
miRNA:   3'- agaUGCCGU----UUUUGcGUGGGCuuUGC- -5'
15659 3' -48.5 NC_004065.1 + 53452 0.66 0.999942
Target:  5'- --gACGGUGGu--CGUGCCCGAGAgGu -3'
miRNA:   3'- agaUGCCGUUuuuGCGUGGGCUUUgC- -5'
15659 3' -48.5 NC_004065.1 + 31281 0.66 0.999942
Target:  5'- gCU-CGGCAGGGcCGCGgCCGAGGg- -3'
miRNA:   3'- aGAuGCCGUUUUuGCGUgGGCUUUgc -5'
15659 3' -48.5 NC_004065.1 + 168919 0.66 0.999942
Target:  5'- --aGCgGGCAAGAACGgCAa-CGAGACGa -3'
miRNA:   3'- agaUG-CCGUUUUUGC-GUggGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 74702 0.66 0.999942
Target:  5'- gCUACGcCGAGgacGGCGUGCUCGAGGCc -3'
miRNA:   3'- aGAUGCcGUUU---UUGCGUGGGCUUUGc -5'
15659 3' -48.5 NC_004065.1 + 41421 0.66 0.999942
Target:  5'- uUCUcCGGCGAcGACcgGCUCGAGAUGg -3'
miRNA:   3'- -AGAuGCCGUUuUUGcgUGGGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 47426 0.66 0.999942
Target:  5'- gUCUG-GGguGAggUGCGCCCGuuuCGc -3'
miRNA:   3'- -AGAUgCCguUUuuGCGUGGGCuuuGC- -5'
15659 3' -48.5 NC_004065.1 + 165851 0.66 0.999937
Target:  5'- --gACGGCGGGGccggacggucucucACGguCCCGAAGgCGa -3'
miRNA:   3'- agaUGCCGUUUU--------------UGCguGGGCUUU-GC- -5'
15659 3' -48.5 NC_004065.1 + 152711 0.66 0.999931
Target:  5'- aUCU-CGGCGAAAuCGUcgaaagugccgguguACCCGAcGACGc -3'
miRNA:   3'- -AGAuGCCGUUUUuGCG---------------UGGGCU-UUGC- -5'
15659 3' -48.5 NC_004065.1 + 60700 0.66 0.999923
Target:  5'- --gACGGUGAugGCGCugcGCCCGucACGc -3'
miRNA:   3'- agaUGCCGUUuuUGCG---UGGGCuuUGC- -5'
15659 3' -48.5 NC_004065.1 + 113264 0.66 0.999923
Target:  5'- --cAgGuGCAGAAAC-CGCCCGAcGCGg -3'
miRNA:   3'- agaUgC-CGUUUUUGcGUGGGCUuUGC- -5'
15659 3' -48.5 NC_004065.1 + 33382 0.66 0.999923
Target:  5'- uUCUGCGcGCGgagccucucGAGGCGCucgcCCCGgcGCa -3'
miRNA:   3'- -AGAUGC-CGU---------UUUUGCGu---GGGCuuUGc -5'
15659 3' -48.5 NC_004065.1 + 171528 0.66 0.999923
Target:  5'- aUCUGCGGU-----CGgACUCGAAAUGa -3'
miRNA:   3'- -AGAUGCCGuuuuuGCgUGGGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 130875 0.66 0.999923
Target:  5'- --gGCGGCGGGcGCGUugCUGGAGa- -3'
miRNA:   3'- agaUGCCGUUUuUGCGugGGCUUUgc -5'
15659 3' -48.5 NC_004065.1 + 99710 0.66 0.999923
Target:  5'- aUCaGCGGCAugcGGAucgaGCGCCCGugGCu -3'
miRNA:   3'- -AGaUGCCGU---UUUug--CGUGGGCuuUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.