miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 5' -58.7 NC_004065.1 + 229246 0.67 0.874781
Target:  5'- uCCGCGcgcucccUCGCCGuUCGUGUcgCGGAUCGc -3'
miRNA:   3'- -GGCGCu------AGCGGC-GGCGCAa-GUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 228886 0.67 0.867899
Target:  5'- uCUGCGAaaaUCaGCUGCUGCGUcgUCuGGCCc -3'
miRNA:   3'- -GGCGCU---AG-CGGCGGCGCA--AGuCUGGc -5'
15662 5' -58.7 NC_004065.1 + 226125 0.72 0.622812
Target:  5'- -gGCGGggGUCGCCGCGUggAGGCUGg -3'
miRNA:   3'- ggCGCUagCGGCGGCGCAagUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 223986 0.66 0.911941
Target:  5'- aCuCGGUCGUCGCCG-GUccCAGGCUGa -3'
miRNA:   3'- gGcGCUAGCGGCGGCgCAa-GUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 223710 0.68 0.846155
Target:  5'- aCCGCGAuUCGCUaGCCGUcucagccUgGGACCGg -3'
miRNA:   3'- -GGCGCU-AGCGG-CGGCGca-----AgUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 223473 0.67 0.875459
Target:  5'- aCCGCG-UCGCCGCUaccgccgacgacuccCGUUCuguauccccuGGACCGa -3'
miRNA:   3'- -GGCGCuAGCGGCGGc--------------GCAAG----------UCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 221981 0.68 0.846155
Target:  5'- gCCGCGGUguuaGCgGUCGUGUaccUCAGACgGc -3'
miRNA:   3'- -GGCGCUAg---CGgCGGCGCA---AGUCUGgC- -5'
15662 5' -58.7 NC_004065.1 + 217140 0.69 0.798223
Target:  5'- cUCGCaccucgCGCCGCCGCGaaC-GACCGu -3'
miRNA:   3'- -GGCGcua---GCGGCGGCGCaaGuCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 213136 0.66 0.922687
Target:  5'- gCGUGGUCaCCGUagugGCGUUgGGGCUGg -3'
miRNA:   3'- gGCGCUAGcGGCGg---CGCAAgUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 211802 0.66 0.900363
Target:  5'- aUCGCGAucaccgUCGCCGCauucguCGCGUuauucguggucgUCGGACUc -3'
miRNA:   3'- -GGCGCU------AGCGGCG------GCGCA------------AGUCUGGc -5'
15662 5' -58.7 NC_004065.1 + 210385 0.73 0.575047
Target:  5'- aUCGCGAUCGgaGUCGUGUUCGuGAUCGu -3'
miRNA:   3'- -GGCGCUAGCggCGGCGCAAGU-CUGGC- -5'
15662 5' -58.7 NC_004065.1 + 208338 0.72 0.642005
Target:  5'- -aGgGAUCGCgGUCGCGUaUCuGACCGc -3'
miRNA:   3'- ggCgCUAGCGgCGGCGCA-AGuCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 203796 0.66 0.922687
Target:  5'- aCCGCaaauacgCGCCGuuGUuUUgGGACCGg -3'
miRNA:   3'- -GGCGcua----GCGGCggCGcAAgUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 201739 0.66 0.894267
Target:  5'- aCCGCGG--GCCGUCGgG-UC-GACCGg -3'
miRNA:   3'- -GGCGCUagCGGCGGCgCaAGuCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 201274 0.73 0.575047
Target:  5'- -gGCGAggCGCCGCgcgcaCGCGgccucgagUCAGACCGg -3'
miRNA:   3'- ggCGCUa-GCGGCG-----GCGCa-------AGUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 200442 0.7 0.745556
Target:  5'- aCCGCGGUcacCGCgGCCGCcgUCAGAUa- -3'
miRNA:   3'- -GGCGCUA---GCGgCGGCGcaAGUCUGgc -5'
15662 5' -58.7 NC_004065.1 + 199514 0.66 0.911941
Target:  5'- aCGCGGcgGCCGCCacguGCGcgCAG-CCGg -3'
miRNA:   3'- gGCGCUagCGGCGG----CGCaaGUCuGGC- -5'
15662 5' -58.7 NC_004065.1 + 198923 0.72 0.642005
Target:  5'- aUCGCG--CGCCGCCggGCGUUCuGAUCGc -3'
miRNA:   3'- -GGCGCuaGCGGCGG--CGCAAGuCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 198808 0.69 0.772385
Target:  5'- -aGCGGUCcgUGCCGCGcgCGGACCu -3'
miRNA:   3'- ggCGCUAGcgGCGGCGCaaGUCUGGc -5'
15662 5' -58.7 NC_004065.1 + 198450 0.73 0.546768
Target:  5'- aCCGaCG-UCGCCGCgucCGCGUUCGGGUCGg -3'
miRNA:   3'- -GGC-GCuAGCGGCG---GCGCAAGUCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.