miRNA display CGI


Results 1 - 20 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15677 5' -60.8 NC_004065.1 + 229596 0.69 0.645085
Target:  5'- uCGCUGGUcgaGCGAccgcccggguuucgaGAUGCCCGUcguaacgcgacGCCGGu -3'
miRNA:   3'- cGCGACCG---CGCU---------------CUAUGGGCG-----------CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 229409 0.66 0.829076
Target:  5'- cUGCcGG-GCGAGGgcGCCC-CGCCGGc -3'
miRNA:   3'- cGCGaCCgCGCUCUa-UGGGcGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 225393 0.67 0.78815
Target:  5'- gGCGCUGGCGCuGAuGGUG-CCGCuCCc- -3'
miRNA:   3'- -CGCGACCGCG-CU-CUAUgGGCGcGGcc -5'
15677 5' -60.8 NC_004065.1 + 224537 0.66 0.829076
Target:  5'- cGUGCUGcGgGCGAGAcguggaugucGCCCGUGuaGGc -3'
miRNA:   3'- -CGCGAC-CgCGCUCUa---------UGGGCGCggCC- -5'
15677 5' -60.8 NC_004065.1 + 224119 0.69 0.679269
Target:  5'- ----cGGC-CGAGAUGgCCGgGCCGGg -3'
miRNA:   3'- cgcgaCCGcGCUCUAUgGGCgCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 222897 0.68 0.698093
Target:  5'- gGCGCUGaCGCGGGcccuccucgGUACUCGCGCa-- -3'
miRNA:   3'- -CGCGACcGCGCUC---------UAUGGGCGCGgcc -5'
15677 5' -60.8 NC_004065.1 + 209245 0.69 0.679269
Target:  5'- cCGC-GGUGCGAGAUAauaugcUCCGCggGCUGGa -3'
miRNA:   3'- cGCGaCCGCGCUCUAU------GGGCG--CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 201361 0.7 0.612687
Target:  5'- cUGCU-GCGCGAGcUGCgCCuCGCCGGg -3'
miRNA:   3'- cGCGAcCGCGCUCuAUG-GGcGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 200119 0.68 0.697156
Target:  5'- cGUGCUGuGCGgcaccgaCGAG-UGCCUGCGgCGGu -3'
miRNA:   3'- -CGCGAC-CGC-------GCUCuAUGGGCGCgGCC- -5'
15677 5' -60.8 NC_004065.1 + 197415 0.69 0.679269
Target:  5'- -aGCUGGCGUcccuggucGAGAgg--CGCGCCGGc -3'
miRNA:   3'- cgCGACCGCG--------CUCUauggGCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 196917 0.69 0.679269
Target:  5'- -gGgUGGCGUGAGAgacGCCgCGCGCUa- -3'
miRNA:   3'- cgCgACCGCGCUCUa--UGG-GCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 196721 0.68 0.707437
Target:  5'- aCGCUGgacaugcaGCGCGAGAaguucUACCgCGUGgCGGa -3'
miRNA:   3'- cGCGAC--------CGCGCUCU-----AUGG-GCGCgGCC- -5'
15677 5' -60.8 NC_004065.1 + 195493 0.72 0.474317
Target:  5'- uCGCUGuCGCGGGA-GCCCGCGUCa- -3'
miRNA:   3'- cGCGACcGCGCUCUaUGGGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 193516 0.66 0.821176
Target:  5'- --cCUGGCG-GAGAaaUGuaauuugucUCCGCGCCGGg -3'
miRNA:   3'- cgcGACCGCgCUCU--AU---------GGGCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 188897 0.67 0.762078
Target:  5'- cCGCUGGuCGUGGugugguacGUGCUCGCcGCCGGc -3'
miRNA:   3'- cGCGACC-GCGCUc-------UAUGGGCG-CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 188832 0.66 0.821176
Target:  5'- gGUGCUGGcCGUgGAGAgcguCCUGCucuCCGGg -3'
miRNA:   3'- -CGCGACC-GCG-CUCUau--GGGCGc--GGCC- -5'
15677 5' -60.8 NC_004065.1 + 177038 0.67 0.774369
Target:  5'- cGCGcCUcgccucaaaccuuggGGCGCGAGGagucuCCCGCGUCa- -3'
miRNA:   3'- -CGC-GA---------------CCGCGCUCUau---GGGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 173712 0.67 0.779571
Target:  5'- gGUGCUGGCGuCGAGcg--CCGCcaCCGGu -3'
miRNA:   3'- -CGCGACCGC-GCUCuaugGGCGc-GGCC- -5'
15677 5' -60.8 NC_004065.1 + 172744 0.68 0.735106
Target:  5'- cCGUccGGUGCGAGGUGCCCGaGCUc- -3'
miRNA:   3'- cGCGa-CCGCGCUCUAUGGGCgCGGcc -5'
15677 5' -60.8 NC_004065.1 + 168621 0.69 0.650798
Target:  5'- gGCuGCUGGCGCu-GGUGCCgCGggcggaGCCGGc -3'
miRNA:   3'- -CG-CGACCGCGcuCUAUGG-GCg-----CGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.