miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15677 5' -60.8 NC_004065.1 + 25031 1.1 0.001616
Target:  5'- uGCGCUGGCGCGAGAUACCCGCGCCGGc -3'
miRNA:   3'- -CGCGACCGCGCUCUAUGGGCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 117721 0.7 0.622211
Target:  5'- cCGgUGGCgGCGAGcgGCCgCGgaGCCGGa -3'
miRNA:   3'- cGCgACCG-CGCUCuaUGG-GCg-CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 111128 0.7 0.626023
Target:  5'- gGCGCacgaugaagucggcaUGGCgacgguucgacGCGGGcgGCCCGCGCCc- -3'
miRNA:   3'- -CGCG---------------ACCG-----------CGCUCuaUGGGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 38035 0.66 0.836821
Target:  5'- -gGCUGGCGCuGAG-UGCCa--GUCGGu -3'
miRNA:   3'- cgCGACCGCG-CUCuAUGGgcgCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 149904 0.72 0.473441
Target:  5'- cGCGCUgcGGCGCGuGcaggGCCUgccgacgGCGCCGGu -3'
miRNA:   3'- -CGCGA--CCGCGCuCua--UGGG-------CGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 92305 0.72 0.500945
Target:  5'- aGCGC--GCGUGAGAUGCCucgagCGCGCCa- -3'
miRNA:   3'- -CGCGacCGCGCUCUAUGG-----GCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 38420 0.71 0.52821
Target:  5'- cCGCUGGCGCG-GAU-CgCCGCGUCu- -3'
miRNA:   3'- cGCGACCGCGCuCUAuG-GGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 82410 0.71 0.556007
Target:  5'- -gGCUGGUGCcucgccagGAGGUACagcguCCGCGCCGc -3'
miRNA:   3'- cgCGACCGCG--------CUCUAUG-----GGCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 128851 0.71 0.574774
Target:  5'- gGCgGCUGGCGCGugcGGAUGCgccuUCGCcGCCGa -3'
miRNA:   3'- -CG-CGACCGCGC---UCUAUG----GGCG-CGGCc -5'
15677 5' -60.8 NC_004065.1 + 87030 0.7 0.612687
Target:  5'- -gGggGGUGgGAGAUggACCCGCGgCGGg -3'
miRNA:   3'- cgCgaCCGCgCUCUA--UGGGCGCgGCC- -5'
15677 5' -60.8 NC_004065.1 + 126750 0.7 0.593681
Target:  5'- gGCGCaUGGCGaCGcGGGUGCagCGCGCCa- -3'
miRNA:   3'- -CGCG-ACCGC-GC-UCUAUGg-GCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 118364 0.71 0.56537
Target:  5'- cGCGC-GGCGaCGAGAgacGCCauggGCGCCGc -3'
miRNA:   3'- -CGCGaCCGC-GCUCUa--UGGg---CGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 125628 0.77 0.279524
Target:  5'- gGCGCUGGaGCugaccaAGGUGCgCGCGCCGGa -3'
miRNA:   3'- -CGCGACCgCGc-----UCUAUGgGCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 54834 0.7 0.603175
Target:  5'- aGCGgaGaGCGCGAGAcAacagcagucUCCGCGCCGc -3'
miRNA:   3'- -CGCgaC-CGCGCUCUaU---------GGGCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 32927 0.74 0.375751
Target:  5'- gGCGCU-GCGCGAGAa--CCGCGCCc- -3'
miRNA:   3'- -CGCGAcCGCGCUCUaugGGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 122824 0.71 0.56537
Target:  5'- gGCGCUGGCGacCGAGAUcaACCaGCGCauGa -3'
miRNA:   3'- -CGCGACCGC--GCUCUA--UGGgCGCGgcC- -5'
15677 5' -60.8 NC_004065.1 + 124846 0.7 0.603175
Target:  5'- cGCGCUGGUGCGGGAcg-UgGCGaCGGa -3'
miRNA:   3'- -CGCGACCGCGCUCUaugGgCGCgGCC- -5'
15677 5' -60.8 NC_004065.1 + 94014 0.7 0.622211
Target:  5'- gGCGCUGGUcuggggagccaaGCGGGGUGCgaggaaUCGaGCCGGg -3'
miRNA:   3'- -CGCGACCG------------CGCUCUAUG------GGCgCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 123912 0.73 0.456964
Target:  5'- aGCGCgccacGUGCGAGGUGauCCUGaCGCCGGu -3'
miRNA:   3'- -CGCGac---CGCGCUCUAU--GGGC-GCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 128259 0.71 0.52821
Target:  5'- -aGUUGGCGCGGcgggccaccucGGUgACCCGCGgCGGc -3'
miRNA:   3'- cgCGACCGCGCU-----------CUA-UGGGCGCgGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.