miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16255 5' -50.5 NC_004084.1 + 4028 0.66 0.954178
Target:  5'- uCGACUGGaACGgcGAuCGCGucaGAGUg -3'
miRNA:   3'- -GCUGACC-UGCuaCUuGUGCuagCUCA- -5'
16255 5' -50.5 NC_004084.1 + 26018 0.66 0.954178
Target:  5'- uCGACgGGAcCGAacgcGGACuCGAUCGAGc -3'
miRNA:   3'- -GCUGaCCU-GCUa---CUUGuGCUAGCUCa -5'
16255 5' -50.5 NC_004084.1 + 10367 0.66 0.949735
Target:  5'- uCGACgaacGACGAgagucGAGCagGCGAUCGAGc -3'
miRNA:   3'- -GCUGac--CUGCUa----CUUG--UGCUAGCUCa -5'
16255 5' -50.5 NC_004084.1 + 51563 0.66 0.949735
Target:  5'- cCGGCUGGAgGuuUGGuCACGAugaccgucuUCGAGg -3'
miRNA:   3'- -GCUGACCUgCu-ACUuGUGCU---------AGCUCa -5'
16255 5' -50.5 NC_004084.1 + 17297 0.66 0.949735
Target:  5'- gCGGCgGuGGCGgcGAGCAC-AUCGAGa -3'
miRNA:   3'- -GCUGaC-CUGCuaCUUGUGcUAGCUCa -5'
16255 5' -50.5 NC_004084.1 + 37468 0.66 0.945015
Target:  5'- cCGACcccGACG-UGAuCACGGUCGGGa -3'
miRNA:   3'- -GCUGac-CUGCuACUuGUGCUAGCUCa -5'
16255 5' -50.5 NC_004084.1 + 5188 0.66 0.945015
Target:  5'- aCGACUGGguagACGAggcggcagGcAGCACGcUCGAGa -3'
miRNA:   3'- -GCUGACC----UGCUa-------C-UUGUGCuAGCUCa -5'
16255 5' -50.5 NC_004084.1 + 54596 0.66 0.940014
Target:  5'- uCGGCgucGACGAa-GACugGAUCGAGg -3'
miRNA:   3'- -GCUGac-CUGCUacUUGugCUAGCUCa -5'
16255 5' -50.5 NC_004084.1 + 53201 0.66 0.940014
Target:  5'- gCGACUGGAagc--AGCACG-UCGAGUc -3'
miRNA:   3'- -GCUGACCUgcuacUUGUGCuAGCUCA- -5'
16255 5' -50.5 NC_004084.1 + 43338 0.66 0.940014
Target:  5'- aCGAgUGGACGGUcucGAACGCcgaGUCGAa- -3'
miRNA:   3'- -GCUgACCUGCUA---CUUGUGc--UAGCUca -5'
16255 5' -50.5 NC_004084.1 + 27849 0.66 0.934728
Target:  5'- ----cGGACGAgcugaagGAACACGAccgauUCGAGg -3'
miRNA:   3'- gcugaCCUGCUa------CUUGUGCU-----AGCUCa -5'
16255 5' -50.5 NC_004084.1 + 23716 0.67 0.929156
Target:  5'- aGAC-GG-CGAUGGACGCGGU-GAGc -3'
miRNA:   3'- gCUGaCCuGCUACUUGUGCUAgCUCa -5'
16255 5' -50.5 NC_004084.1 + 1298 0.67 0.929156
Target:  5'- gCGACaccgaGGACGuccucGACugGAUCGAGg -3'
miRNA:   3'- -GCUGa----CCUGCuac--UUGugCUAGCUCa -5'
16255 5' -50.5 NC_004084.1 + 35260 0.67 0.917153
Target:  5'- aCGACcaggaUGGACGAUGGACGa-GUCGGc- -3'
miRNA:   3'- -GCUG-----ACCUGCUACUUGUgcUAGCUca -5'
16255 5' -50.5 NC_004084.1 + 10880 0.67 0.910722
Target:  5'- -cACUGGcCgGAUGAugGCGAucgUCGGGUa -3'
miRNA:   3'- gcUGACCuG-CUACUugUGCU---AGCUCA- -5'
16255 5' -50.5 NC_004084.1 + 21837 0.67 0.910722
Target:  5'- -cGCUGGACGAUGcagggauuGGCgACGA-CGAGUu -3'
miRNA:   3'- gcUGACCUGCUAC--------UUG-UGCUaGCUCA- -5'
16255 5' -50.5 NC_004084.1 + 24048 0.67 0.904007
Target:  5'- aGAC-GG-CGAUGGACGCGGUUGcGg -3'
miRNA:   3'- gCUGaCCuGCUACUUGUGCUAGCuCa -5'
16255 5' -50.5 NC_004084.1 + 55918 0.68 0.889741
Target:  5'- gGGCUGGAuCGG-GAAUGCGAUCGu-- -3'
miRNA:   3'- gCUGACCU-GCUaCUUGUGCUAGCuca -5'
16255 5' -50.5 NC_004084.1 + 24018 0.68 0.889741
Target:  5'- aGAC-GG-CGAUGGACGCGGUUGcGGg -3'
miRNA:   3'- gCUGaCCuGCUACUUGUGCUAGC-UCa -5'
16255 5' -50.5 NC_004084.1 + 22133 0.68 0.887506
Target:  5'- cCGGCUGGgaaGCGAUGAcugacCGCGAgcgccucggcgcacUCGAGg -3'
miRNA:   3'- -GCUGACC---UGCUACUu----GUGCU--------------AGCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.