miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16267 3' -52.8 NC_004084.1 + 56520 0.66 0.907134
Target:  5'- aUGUCGGUCGgccccauccccgacuUGGCgUGGCaguccaggagGCGACGUCg -3'
miRNA:   3'- -ACAGCUAGC---------------ACUG-GCUG----------UGCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 22565 0.66 0.904497
Target:  5'- aUGuUCGAcUCGgcguucGGCCGAU-CGGCGUCUg -3'
miRNA:   3'- -AC-AGCU-AGCa-----CUGGCUGuGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 23917 0.66 0.904497
Target:  5'- uUGUCGAagaggagaUCGcGAUgGACGCGGuaaguaGUCCg -3'
miRNA:   3'- -ACAGCU--------AGCaCUGgCUGUGCUg-----CAGG- -5'
16267 3' -52.8 NC_004084.1 + 48966 0.66 0.904497
Target:  5'- --aCGAU-GccGCCGACuACGGCGUCCc -3'
miRNA:   3'- acaGCUAgCacUGGCUG-UGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 46480 0.66 0.904497
Target:  5'- -cUCGAUCGaguccucGCUGGuCGCGACGUCg -3'
miRNA:   3'- acAGCUAGCac-----UGGCU-GUGCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 14159 0.66 0.904497
Target:  5'- cGUCG-UCGUGAa-GGC-CGGuCGUCCc -3'
miRNA:   3'- aCAGCuAGCACUggCUGuGCU-GCAGG- -5'
16267 3' -52.8 NC_004084.1 + 32038 0.66 0.903831
Target:  5'- cGUCGcGUC-UGACCagacGGCgauggauucgguuGCGGCGUCCa -3'
miRNA:   3'- aCAGC-UAGcACUGG----CUG-------------UGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 12589 0.66 0.903831
Target:  5'- --aUGAUCGagGACgCGAUcaagggaACGAUGUCCg -3'
miRNA:   3'- acaGCUAGCa-CUG-GCUG-------UGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 560 0.66 0.890677
Target:  5'- aGUCGAg-GUGACguuCGCGAUGUCg -3'
miRNA:   3'- aCAGCUagCACUGgcuGUGCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 8157 0.66 0.890677
Target:  5'- --cUGGUCGUG-CCGACcagcccgcuccaGCGACG-CCu -3'
miRNA:   3'- acaGCUAGCACuGGCUG------------UGCUGCaGG- -5'
16267 3' -52.8 NC_004084.1 + 8897 0.66 0.890677
Target:  5'- -cUCGAUCGUccguggaugccGACCGGaucgaguCGACGUaCCg -3'
miRNA:   3'- acAGCUAGCA-----------CUGGCUgu-----GCUGCA-GG- -5'
16267 3' -52.8 NC_004084.1 + 27336 0.66 0.890677
Target:  5'- -uUCGAgggacgCGgugGGCCGG-ACGACGUCUc -3'
miRNA:   3'- acAGCUa-----GCa--CUGGCUgUGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 58393 0.66 0.890677
Target:  5'- -cUCG---GUGGCCGACACGACcUCg -3'
miRNA:   3'- acAGCuagCACUGGCUGUGCUGcAGg -5'
16267 3' -52.8 NC_004084.1 + 50776 0.66 0.890677
Target:  5'- cUG-CGAUUGUgaGACCGACgagACGAacccgggaauCGUCCu -3'
miRNA:   3'- -ACaGCUAGCA--CUGGCUG---UGCU----------GCAGG- -5'
16267 3' -52.8 NC_004084.1 + 35129 0.66 0.890677
Target:  5'- uUGUCGAUCcUGGgCGu--CGAgGUCCu -3'
miRNA:   3'- -ACAGCUAGcACUgGCuguGCUgCAGG- -5'
16267 3' -52.8 NC_004084.1 + 35885 0.66 0.883379
Target:  5'- -aUCGGUCGUcuucGGCCGGagGCGAuCGUCg -3'
miRNA:   3'- acAGCUAGCA----CUGGCUg-UGCU-GCAGg -5'
16267 3' -52.8 NC_004084.1 + 27058 0.66 0.883379
Target:  5'- gUGUCGAUCGcgcgaUGcUCGACGuCGACGacgaacugcUCCg -3'
miRNA:   3'- -ACAGCUAGC-----ACuGGCUGU-GCUGC---------AGG- -5'
16267 3' -52.8 NC_004084.1 + 18872 0.66 0.883379
Target:  5'- aGUCGAUCGcgcUGGCCauCACGAgGagaUCCu -3'
miRNA:   3'- aCAGCUAGC---ACUGGcuGUGCUgC---AGG- -5'
16267 3' -52.8 NC_004084.1 + 6874 0.66 0.882635
Target:  5'- aGcCGGUCGUGgauGCCGAgguacgucgggauCGCGACcGUCUc -3'
miRNA:   3'- aCaGCUAGCAC---UGGCU-------------GUGCUG-CAGG- -5'
16267 3' -52.8 NC_004084.1 + 6418 0.66 0.875828
Target:  5'- cGUUGAUCG-GAUgaCGAgACGugGUgCg -3'
miRNA:   3'- aCAGCUAGCaCUG--GCUgUGCugCAgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.