miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16267 3' -52.8 NC_004084.1 + 48966 0.66 0.904497
Target:  5'- --aCGAU-GccGCCGACuACGGCGUCCc -3'
miRNA:   3'- acaGCUAgCacUGGCUG-UGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 48905 0.69 0.758084
Target:  5'- cGUCGGUCG-G-UCGGcCACGACuUCCg -3'
miRNA:   3'- aCAGCUAGCaCuGGCU-GUGCUGcAGG- -5'
16267 3' -52.8 NC_004084.1 + 48431 0.67 0.851718
Target:  5'- cGUCGAcgUCGUcGGCCaguacggugaACACGAUGUCg -3'
miRNA:   3'- aCAGCU--AGCA-CUGGc---------UGUGCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 48312 0.66 0.875828
Target:  5'- aGUCGAgcagugcagUGUGAUCGuCGCGcccccuuCGUCCu -3'
miRNA:   3'- aCAGCUa--------GCACUGGCuGUGCu------GCAGG- -5'
16267 3' -52.8 NC_004084.1 + 46764 0.74 0.481495
Target:  5'- aGUCG-UCGccGACCGACGuCGACGUgCu -3'
miRNA:   3'- aCAGCuAGCa-CUGGCUGU-GCUGCAgG- -5'
16267 3' -52.8 NC_004084.1 + 46566 0.73 0.522627
Target:  5'- cGUCGGUCGUGAacUCGAUAuCGcCGUCa -3'
miRNA:   3'- aCAGCUAGCACU--GGCUGU-GCuGCAGg -5'
16267 3' -52.8 NC_004084.1 + 46480 0.66 0.904497
Target:  5'- -cUCGAUCGaguccucGCUGGuCGCGACGUCg -3'
miRNA:   3'- acAGCUAGCac-----UGGCU-GUGCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 45634 0.69 0.722838
Target:  5'- cUGUCGGUCGUcGacggcgucucggauGCCGACAacgacgagacgguCGGCGUCg -3'
miRNA:   3'- -ACAGCUAGCA-C--------------UGGCUGU-------------GCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 44626 0.7 0.716499
Target:  5'- -cUCGGUCGcGACCaaccgGACGCGAUcUCCg -3'
miRNA:   3'- acAGCUAGCaCUGG-----CUGUGCUGcAGG- -5'
16267 3' -52.8 NC_004084.1 + 44352 0.69 0.758084
Target:  5'- cGUCGGUCGcggUGACaacggcgagCGACAccuccugaacacCGAUGUCCa -3'
miRNA:   3'- aCAGCUAGC---ACUG---------GCUGU------------GCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 41421 0.67 0.857533
Target:  5'- cUGU-GAUCGUaccuacuaaagcugGGCCGACGCGAUcgagGUCUu -3'
miRNA:   3'- -ACAgCUAGCA--------------CUGGCUGUGCUG----CAGG- -5'
16267 3' -52.8 NC_004084.1 + 41271 0.67 0.826482
Target:  5'- cGgCGAUCGUccccaucagugaaccGCCGACcucauCGACGUCCu -3'
miRNA:   3'- aCaGCUAGCAc--------------UGGCUGu----GCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 40434 0.69 0.7375
Target:  5'- cUGUUcgaGAUCGaGGCCGAgggcgacacCgACGACGUCCa -3'
miRNA:   3'- -ACAG---CUAGCaCUGGCU---------G-UGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 40330 0.67 0.825581
Target:  5'- -aUCGAUCGUGGuuGAaacuCGAUGUUg -3'
miRNA:   3'- acAGCUAGCACUggCUgu--GCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 39637 0.67 0.85999
Target:  5'- aGUCGAUCGU-----ACGCGACG-CCg -3'
miRNA:   3'- aCAGCUAGCAcuggcUGUGCUGCaGG- -5'
16267 3' -52.8 NC_004084.1 + 39602 0.71 0.651883
Target:  5'- cGUCcuccugGA-CGUGGCCG--GCGACGUCCu -3'
miRNA:   3'- aCAG------CUaGCACUGGCugUGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 38839 0.71 0.630091
Target:  5'- cGUCGuccUCGUGGuCUGGgACGuCGUCCu -3'
miRNA:   3'- aCAGCu--AGCACU-GGCUgUGCuGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 38309 0.67 0.867236
Target:  5'- cGUCGAcgagCGUGACguCGAUAuCGACGgucgucuUCCg -3'
miRNA:   3'- aCAGCUa---GCACUG--GCUGU-GCUGC-------AGG- -5'
16267 3' -52.8 NC_004084.1 + 36947 0.68 0.816457
Target:  5'- cGUCGGUCGgguacgGACUGuu-CaGCGUCCg -3'
miRNA:   3'- aCAGCUAGCa-----CUGGCuguGcUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 36458 0.72 0.597438
Target:  5'- gUGUCGAUCucGGCgGAgACGuCGUCCu -3'
miRNA:   3'- -ACAGCUAGcaCUGgCUgUGCuGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.