miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16267 3' -52.8 NC_004084.1 + 41271 0.67 0.826482
Target:  5'- cGgCGAUCGUccccaucagugaaccGCCGACcucauCGACGUCCu -3'
miRNA:   3'- aCaGCUAGCAc--------------UGGCUGu----GCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 56116 0.67 0.833622
Target:  5'- cGUCGAcgUCGUGcGCCG-CAgugucguCGGCGUCg -3'
miRNA:   3'- aCAGCU--AGCAC-UGGCuGU-------GCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 16791 0.67 0.868029
Target:  5'- cGUCGAUguccCG-GACCGucgccuCGCGuuCGUCCu -3'
miRNA:   3'- aCAGCUA----GCaCUGGCu-----GUGCu-GCAGG- -5'
16267 3' -52.8 NC_004084.1 + 48312 0.66 0.875828
Target:  5'- aGUCGAgcagugcagUGUGAUCGuCGCGcccccuuCGUCCu -3'
miRNA:   3'- aCAGCUa--------GCACUGGCuGUGCu------GCAGG- -5'
16267 3' -52.8 NC_004084.1 + 52957 0.68 0.778163
Target:  5'- cGUCG-UCGUGAUCGuCGCGA-GUgCg -3'
miRNA:   3'- aCAGCuAGCACUGGCuGUGCUgCAgG- -5'
16267 3' -52.8 NC_004084.1 + 56212 0.67 0.825581
Target:  5'- aGUCGGgcgUGUGGCCGuGCAucuUGcCGUCCc -3'
miRNA:   3'- aCAGCUa--GCACUGGC-UGU---GCuGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 18019 0.67 0.851718
Target:  5'- cGUCGA-CGgcGAgUGugAUGugGUCCg -3'
miRNA:   3'- aCAGCUaGCa-CUgGCugUGCugCAGG- -5'
16267 3' -52.8 NC_004084.1 + 6874 0.66 0.882635
Target:  5'- aGcCGGUCGUGgauGCCGAgguacgucgggauCGCGACcGUCUc -3'
miRNA:   3'- aCaGCUAGCAC---UGGCU-------------GUGCUG-CAGG- -5'
16267 3' -52.8 NC_004084.1 + 30342 0.67 0.825581
Target:  5'- cGUCGGcgagGUGGCCGA--CGGCGUCg -3'
miRNA:   3'- aCAGCUag--CACUGGCUguGCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 18872 0.66 0.883379
Target:  5'- aGUCGAUCGcgcUGGCCauCACGAgGagaUCCu -3'
miRNA:   3'- aCAGCUAGC---ACUGGcuGUGCUgC---AGG- -5'
16267 3' -52.8 NC_004084.1 + 48431 0.67 0.851718
Target:  5'- cGUCGAcgUCGUcGGCCaguacggugaACACGAUGUCg -3'
miRNA:   3'- aCAGCU--AGCA-CUGGc---------UGUGCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 15733 0.67 0.825581
Target:  5'- cGUCGuUCGUGAgCGugAUGAUGa-- -3'
miRNA:   3'- aCAGCuAGCACUgGCugUGCUGCagg -5'
16267 3' -52.8 NC_004084.1 + 41421 0.67 0.857533
Target:  5'- cUGU-GAUCGUaccuacuaaagcugGGCCGACGCGAUcgagGUCUu -3'
miRNA:   3'- -ACAgCUAGCA--------------CUGGCUGUGCUG----CAGG- -5'
16267 3' -52.8 NC_004084.1 + 38309 0.67 0.867236
Target:  5'- cGUCGAcgagCGUGACguCGAUAuCGACGgucgucuUCCg -3'
miRNA:   3'- aCAGCUa---GCACUG--GCUGU-GCUGC-------AGG- -5'
16267 3' -52.8 NC_004084.1 + 23304 0.66 0.875828
Target:  5'- aG-CGAgcgCGUGACCGAgaGCG-CGUaCCa -3'
miRNA:   3'- aCaGCUa--GCACUGGCUg-UGCuGCA-GG- -5'
16267 3' -52.8 NC_004084.1 + 23063 0.66 0.875828
Target:  5'- cG-CGAUCGUcGCCGGCgacGCGACGa-- -3'
miRNA:   3'- aCaGCUAGCAcUGGCUG---UGCUGCagg -5'
16267 3' -52.8 NC_004084.1 + 18806 0.69 0.758084
Target:  5'- cGUCGAggaCGUcGCCGGC-C-ACGUCCa -3'
miRNA:   3'- aCAGCUa--GCAcUGGCUGuGcUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 57639 0.68 0.775187
Target:  5'- gGUCGcgCGUcgccucgacgagccGAUCGGcCugGugGUCCa -3'
miRNA:   3'- aCAGCuaGCA--------------CUGGCU-GugCugCAGG- -5'
16267 3' -52.8 NC_004084.1 + 22512 0.68 0.79765
Target:  5'- cGUCGA-CGcGGCCacuccaGCGgGACGUCCg -3'
miRNA:   3'- aCAGCUaGCaCUGGc-----UGUgCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 36947 0.68 0.816457
Target:  5'- cGUCGGUCGgguacgGACUGuu-CaGCGUCCg -3'
miRNA:   3'- aCAGCUAGCa-----CUGGCuguGcUGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.