miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16274 5' -52.9 NC_004084.1 + 764 0.65 0.879917
Target:  5'- uUCGACGAaguccguccacgauUCAUCGUCGcccuuguguuGGUCGagGCg -3'
miRNA:   3'- cAGCUGCU--------------AGUAGUAGU----------CCAGCggCG- -5'
16274 5' -52.9 NC_004084.1 + 48044 0.66 0.874499
Target:  5'- cUCGACG-UCGaacUCAUCcGGacggCGCUGCa -3'
miRNA:   3'- cAGCUGCuAGU---AGUAGuCCa---GCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 37196 0.66 0.866544
Target:  5'- -aCGAUG-UCGUCAcCGGcuUCGCCGCc -3'
miRNA:   3'- caGCUGCuAGUAGUaGUCc-AGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 58041 0.66 0.866544
Target:  5'- -gCGGCGA-CGUCccCGGGcUCGCgGCa -3'
miRNA:   3'- caGCUGCUaGUAGuaGUCC-AGCGgCG- -5'
16274 5' -52.9 NC_004084.1 + 36414 0.66 0.858343
Target:  5'- uGUCGAUGuUCGUCcgCGcGUCGUCGa -3'
miRNA:   3'- -CAGCUGCuAGUAGuaGUcCAGCGGCg -5'
16274 5' -52.9 NC_004084.1 + 20037 0.66 0.858343
Target:  5'- -aCGACGAUCGcgucUCGUCA-GUCGauGCu -3'
miRNA:   3'- caGCUGCUAGU----AGUAGUcCAGCggCG- -5'
16274 5' -52.9 NC_004084.1 + 47536 0.66 0.858343
Target:  5'- -cCGACGAUCGccaUCAUCcggccaguggAGGagaCGCCGUu -3'
miRNA:   3'- caGCUGCUAGU---AGUAG----------UCCa--GCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 55254 0.66 0.858343
Target:  5'- cGUCGACGA-CGUCuac-GGUCgGCgGCg -3'
miRNA:   3'- -CAGCUGCUaGUAGuaguCCAG-CGgCG- -5'
16274 5' -52.9 NC_004084.1 + 26483 0.66 0.858343
Target:  5'- -cCGGCGA-CGUUgaGUguGGUCGUCGUc -3'
miRNA:   3'- caGCUGCUaGUAG--UAguCCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 54485 0.66 0.858343
Target:  5'- -aCGGCGGggAUgaUGUCGGGUgCGCCGUa -3'
miRNA:   3'- caGCUGCUagUA--GUAGUCCA-GCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 1412 0.66 0.858343
Target:  5'- -cCGGCGucgcCAUUcUCGGcGUCGCCGUc -3'
miRNA:   3'- caGCUGCua--GUAGuAGUC-CAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 47757 0.66 0.849904
Target:  5'- gGUUGgcGCGAUcCAUCAUCGa--CGCCGCg -3'
miRNA:   3'- -CAGC--UGCUA-GUAGUAGUccaGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 16650 0.66 0.849904
Target:  5'- cGUCGACG-UCGUC--CGGGagguccUCGUCGCc -3'
miRNA:   3'- -CAGCUGCuAGUAGuaGUCC------AGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 46498 0.66 0.849904
Target:  5'- gGUCG-CGA-CGUCG-CcGGUCGCCGa -3'
miRNA:   3'- -CAGCuGCUaGUAGUaGuCCAGCGGCg -5'
16274 5' -52.9 NC_004084.1 + 26169 0.66 0.849904
Target:  5'- aGUCGACGAgaaCGUagucccaacgacCGUCGGcGUCGUCGa -3'
miRNA:   3'- -CAGCUGCUa--GUA------------GUAGUC-CAGCGGCg -5'
16274 5' -52.9 NC_004084.1 + 50299 0.66 0.849904
Target:  5'- -gCGuCGGUCAUCAgguUCAGGaugCGguCCGCa -3'
miRNA:   3'- caGCuGCUAGUAGU---AGUCCa--GC--GGCG- -5'
16274 5' -52.9 NC_004084.1 + 28094 0.66 0.841234
Target:  5'- -cCGACGGUCAaCGguUCGGGgugCGCCu- -3'
miRNA:   3'- caGCUGCUAGUaGU--AGUCCa--GCGGcg -5'
16274 5' -52.9 NC_004084.1 + 10041 0.66 0.841234
Target:  5'- cGUCGACGGUgAccUAUCAcGGUCGaUCGUa -3'
miRNA:   3'- -CAGCUGCUAgUa-GUAGU-CCAGC-GGCG- -5'
16274 5' -52.9 NC_004084.1 + 53959 0.66 0.841234
Target:  5'- cUCGAacuCGAUCGUCcaGUCGGGcgCGUCGa -3'
miRNA:   3'- cAGCU---GCUAGUAG--UAGUCCa-GCGGCg -5'
16274 5' -52.9 NC_004084.1 + 36117 0.66 0.841234
Target:  5'- -gCGGCGuAUCGUCAUCgccgaacgcgAGGUgCGuuGCc -3'
miRNA:   3'- caGCUGC-UAGUAGUAG----------UCCA-GCggCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.