miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16276 5' -50.5 NC_004084.1 + 11380 0.66 0.96568
Target:  5'- aGUC-CGGGcacuccccGGCaUCGUCAUCGaUCGCg -3'
miRNA:   3'- cCAGuGCUU--------CUGcAGCAGUAGC-AGCG- -5'
16276 5' -50.5 NC_004084.1 + 53197 0.66 0.962079
Target:  5'- cGUCGCGAcuggaagcAGcACGUCGagucgCAcCGUCGUg -3'
miRNA:   3'- cCAGUGCU--------UC-UGCAGCa----GUaGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 34722 0.66 0.962079
Target:  5'- cGUCugGGAGACGcucaccgCGUcCAUUGcCGUc -3'
miRNA:   3'- cCAGugCUUCUGCa------GCA-GUAGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 58121 0.66 0.962079
Target:  5'- gGGUUcuCGucGGCgGUCGUCGUCGagcCGCc -3'
miRNA:   3'- -CCAGu-GCuuCUG-CAGCAGUAGCa--GCG- -5'
16276 5' -50.5 NC_004084.1 + 48978 0.66 0.962079
Target:  5'- cGUCuuCGucGACGUCGcggccCAUCG-CGCg -3'
miRNA:   3'- cCAGu-GCuuCUGCAGCa----GUAGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 38443 0.66 0.962079
Target:  5'- --aCGCGc-GACGUCGaCGUCGUCa- -3'
miRNA:   3'- ccaGUGCuuCUGCAGCaGUAGCAGcg -5'
16276 5' -50.5 NC_004084.1 + 54614 0.66 0.962079
Target:  5'- aGUCAuCGgcGGCGUCacGUaucgaAUCGUCGUc -3'
miRNA:   3'- cCAGU-GCuuCUGCAG--CAg----UAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 34836 0.66 0.958224
Target:  5'- ---gGCGGAGcACGaCGUCGUCGUacgagaCGCa -3'
miRNA:   3'- ccagUGCUUC-UGCaGCAGUAGCA------GCG- -5'
16276 5' -50.5 NC_004084.1 + 7174 0.66 0.958224
Target:  5'- cGGUCgcaGCGAuccGGACGUCGagCugcUCGaCGCa -3'
miRNA:   3'- -CCAG---UGCU---UCUGCAGCa-Gu--AGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 7476 0.66 0.958224
Target:  5'- cGUCGaggaGGAGAUcaggGUCGUCGaCGUCGa -3'
miRNA:   3'- cCAGUg---CUUCUG----CAGCAGUaGCAGCg -5'
16276 5' -50.5 NC_004084.1 + 19973 0.66 0.954108
Target:  5'- uGGU--UGAcGACGUCGaCGUCG-CGCg -3'
miRNA:   3'- -CCAguGCUuCUGCAGCaGUAGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 28405 0.66 0.954108
Target:  5'- cGUCgauGCGAAcgcuGACGUCGUCAccagcgaccaggUCGaCGCc -3'
miRNA:   3'- cCAG---UGCUU----CUGCAGCAGU------------AGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 13330 0.66 0.954108
Target:  5'- cGGagACGAucAUGUCGuUCAUCG-CGCc -3'
miRNA:   3'- -CCagUGCUucUGCAGC-AGUAGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 23598 0.66 0.949727
Target:  5'- -aUCGCGAuGGACG-CGgugagCA-CGUCGCa -3'
miRNA:   3'- ccAGUGCU-UCUGCaGCa----GUaGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 16103 0.66 0.949727
Target:  5'- cGUCcCGAcGGuCGUCGcgAUCGUCGCc -3'
miRNA:   3'- cCAGuGCU-UCuGCAGCagUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 45398 0.67 0.945076
Target:  5'- cGGUCGUGAAGGUGUUGcUCGagGUCGUc -3'
miRNA:   3'- -CCAGUGCUUCUGCAGC-AGUagCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 1356 0.67 0.945076
Target:  5'- --cCACGGgcGGAcCGUCGUgAUCGggaCGCg -3'
miRNA:   3'- ccaGUGCU--UCU-GCAGCAgUAGCa--GCG- -5'
16276 5' -50.5 NC_004084.1 + 4496 0.67 0.944596
Target:  5'- --aCACGAaacugcaGGAUGUCGagAUCGccUCGCa -3'
miRNA:   3'- ccaGUGCU-------UCUGCAGCagUAGC--AGCG- -5'
16276 5' -50.5 NC_004084.1 + 8229 0.67 0.940152
Target:  5'- cGGUUGCaGAGGGCGaCGUCGagacgaUCGaCGCc -3'
miRNA:   3'- -CCAGUG-CUUCUGCaGCAGU------AGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 29579 0.67 0.940152
Target:  5'- -aUCGcCGGguGGGCGUCGUUcgCG-CGCa -3'
miRNA:   3'- ccAGU-GCU--UCUGCAGCAGuaGCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.