Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16283 | 5' | -53.5 | NC_004084.1 | + | 28283 | 0.66 | 0.841234 |
Target: 5'- -cUCgUGGACGGgagucUCGCGAUCGggGCGg- -3' miRNA: 3'- caAGgACCUGCU-----AGCGCUGGU--UGCag -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 43117 | 0.66 | 0.841234 |
Target: 5'- -aUCCUGGGCGGUC---AUCAcCGUCg -3' miRNA: 3'- caAGGACCUGCUAGcgcUGGUuGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 41441 | 0.66 | 0.841234 |
Target: 5'- ---gCUGGGcCGA-CGCGAUCGAgGUCu -3' miRNA: 3'- caagGACCU-GCUaGCGCUGGUUgCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 35480 | 0.66 | 0.841234 |
Target: 5'- -gUCgaGGcgGCGAUCGCcgagaucccGACCAACGgUCg -3' miRNA: 3'- caAGgaCC--UGCUAGCG---------CUGGUUGC-AG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 12064 | 0.66 | 0.841234 |
Target: 5'- -gUCCUGGACGAaacccacagUUggGCGAgCGACGa- -3' miRNA: 3'- caAGGACCUGCU---------AG--CGCUgGUUGCag -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 26977 | 0.66 | 0.835925 |
Target: 5'- ---gCUGGuCGAcagagaccagauccaUCGCGGCC-GCGUCg -3' miRNA: 3'- caagGACCuGCU---------------AGCGCUGGuUGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 22985 | 0.66 | 0.832342 |
Target: 5'- -gUCCUGGuCGAccUCGCGAgcgagaUCGACGa- -3' miRNA: 3'- caAGGACCuGCU--AGCGCU------GGUUGCag -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 13567 | 0.66 | 0.832342 |
Target: 5'- -cUCCUGGAa-GUCGCgGGCCGAUccgaccucgGUCa -3' miRNA: 3'- caAGGACCUgcUAGCG-CUGGUUG---------CAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 2844 | 0.66 | 0.823238 |
Target: 5'- -gUCCgcGGugGAUCGCagGACaccaucgaaGACGUCa -3' miRNA: 3'- caAGGa-CCugCUAGCG--CUGg--------UUGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 35363 | 0.66 | 0.813931 |
Target: 5'- --gCCgGcGACGAUCGCGaagugcGCCAagaucACGUCg -3' miRNA: 3'- caaGGaC-CUGCUAGCGC------UGGU-----UGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 16660 | 0.66 | 0.813931 |
Target: 5'- -gUCCgGGAgGuccUCGUcGCCGGCGUCg -3' miRNA: 3'- caAGGaCCUgCu--AGCGcUGGUUGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 6123 | 0.66 | 0.812989 |
Target: 5'- cGUUCa-GGuCGAUgcgauucCGCGACCAGCGcCg -3' miRNA: 3'- -CAAGgaCCuGCUA-------GCGCUGGUUGCaG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 46753 | 0.66 | 0.804431 |
Target: 5'- -gUCCUcGcCGuagucGUCGcCGACCGACGUCg -3' miRNA: 3'- caAGGAcCuGC-----UAGC-GCUGGUUGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 50813 | 0.66 | 0.804431 |
Target: 5'- -gUCCUGGACccguUCGCGggcGCCGGCa-- -3' miRNA: 3'- caAGGACCUGcu--AGCGC---UGGUUGcag -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 1237 | 0.66 | 0.804431 |
Target: 5'- -aUCgaGGGCGAUCGCGcCCAucuCcUCa -3' miRNA: 3'- caAGgaCCUGCUAGCGCuGGUu--GcAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 21779 | 0.66 | 0.804431 |
Target: 5'- -aUCgaGGAgccguaCGAUCGCGAgccgaugcaccUCAACGUCa -3' miRNA: 3'- caAGgaCCU------GCUAGCGCU-----------GGUUGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 38523 | 0.66 | 0.804431 |
Target: 5'- -aUCgaUGGugGAUCgGCGgACCAACGa- -3' miRNA: 3'- caAGg-ACCugCUAG-CGC-UGGUUGCag -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 29249 | 0.66 | 0.804431 |
Target: 5'- aGUUCCgcUGGACGAacggcccgCGCGACCAc---- -3' miRNA: 3'- -CAAGG--ACCUGCUa-------GCGCUGGUugcag -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 29410 | 0.67 | 0.79475 |
Target: 5'- -cUCCUgGGGCG-UCGCGGuuGcCGUCg -3' miRNA: 3'- caAGGA-CCUGCuAGCGCUggUuGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 6158 | 0.67 | 0.791811 |
Target: 5'- gGUUCCUGG-CGAUCGgGcuCCAGguggaccucgagcuCGUCu -3' miRNA: 3'- -CAAGGACCuGCUAGCgCu-GGUU--------------GCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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