miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16298 3' -55.2 NC_004084.1 + 26190 0.66 0.806589
Target:  5'- -aACGACCGuCGGcGUCGUCGagGa-- -3'
miRNA:   3'- agUGCUGGCuGCC-CAGUAGCagCagc -5'
16298 3' -55.2 NC_004084.1 + 2427 0.66 0.806589
Target:  5'- aCGCGAUCGugGGcGgugaAUCGacCGUCGa -3'
miRNA:   3'- aGUGCUGGCugCC-Cag--UAGCa-GCAGC- -5'
16298 3' -55.2 NC_004084.1 + 28654 0.66 0.806589
Target:  5'- gUCGCGAUgcagGAC-GGUCAUCGUC-UCGc -3'
miRNA:   3'- -AGUGCUGg---CUGcCCAGUAGCAGcAGC- -5'
16298 3' -55.2 NC_004084.1 + 9415 0.66 0.803804
Target:  5'- gUCACGAUCGACacggaccgcgcgauGGG-CcgCGaCGUCGa -3'
miRNA:   3'- -AGUGCUGGCUG--------------CCCaGuaGCaGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 2516 0.66 0.787738
Target:  5'- cCACuccuCCGGCGGaUCGUCGUCG-Ca -3'
miRNA:   3'- aGUGcu--GGCUGCCcAGUAGCAGCaGc -5'
16298 3' -55.2 NC_004084.1 + 50991 0.66 0.787738
Target:  5'- cUCGCcACCGuCGGcaUCGcccUCGUCGUCGa -3'
miRNA:   3'- -AGUGcUGGCuGCCc-AGU---AGCAGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 13123 0.66 0.787738
Target:  5'- cCugGAgUuGCGGGcCGUCGUCGUa- -3'
miRNA:   3'- aGugCUgGcUGCCCaGUAGCAGCAgc -5'
16298 3' -55.2 NC_004084.1 + 12742 0.66 0.787738
Target:  5'- gCACGaucucgucgacGCCGAcCGucUCGUCGUUGUCGg -3'
miRNA:   3'- aGUGC-----------UGGCU-GCccAGUAGCAGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 26478 0.66 0.778077
Target:  5'- gCGCG-CCGGCGacguugaguguGGUCGUCGUCuUCc -3'
miRNA:   3'- aGUGCuGGCUGC-----------CCAGUAGCAGcAGc -5'
16298 3' -55.2 NC_004084.1 + 8131 0.66 0.778077
Target:  5'- -gAUGACCGACGccuGGUCGgcaGaCGUCGa -3'
miRNA:   3'- agUGCUGGCUGC---CCAGUag-CaGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 6545 0.66 0.768273
Target:  5'- aUCuCGACCGGCGuccGGUaguUCGacUCGUCGa -3'
miRNA:   3'- -AGuGCUGGCUGC---CCAgu-AGC--AGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 16099 0.66 0.768273
Target:  5'- aUCuCGucCCGAC-GGUCGUCGcgaUCGUCGc -3'
miRNA:   3'- -AGuGCu-GGCUGcCCAGUAGC---AGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 3348 0.66 0.768273
Target:  5'- -aACcGCCGAUuGGUCGUCGacgugCGUCGa -3'
miRNA:   3'- agUGcUGGCUGcCCAGUAGCa----GCAGC- -5'
16298 3' -55.2 NC_004084.1 + 58106 0.67 0.748276
Target:  5'- cCGCGcCCcugcuuCGGGUUcucgucggcgGUCGUCGUCGa -3'
miRNA:   3'- aGUGCuGGcu----GCCCAG----------UAGCAGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 31320 0.67 0.748276
Target:  5'- uUCugGAuCCGGCucGGGauccggagCAguUCGUCGUCGa -3'
miRNA:   3'- -AGugCU-GGCUG--CCCa-------GU--AGCAGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 17328 0.67 0.738104
Target:  5'- cCGCGG-CGACGGcccgCAUCGucUCGUCGa -3'
miRNA:   3'- aGUGCUgGCUGCCca--GUAGC--AGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 49665 0.67 0.727831
Target:  5'- aC-CGGCUGAagcCGGGUgGUCcGUCGUCu -3'
miRNA:   3'- aGuGCUGGCU---GCCCAgUAG-CAGCAGc -5'
16298 3' -55.2 NC_004084.1 + 18696 0.67 0.707024
Target:  5'- gUCAuccuCG-UCGACGGcGUCGUCGcCGUCa -3'
miRNA:   3'- -AGU----GCuGGCUGCC-CAGUAGCaGCAGc -5'
16298 3' -55.2 NC_004084.1 + 52659 0.67 0.707024
Target:  5'- -uGCGGCgaGACGGag-AUCGUCGUCGa -3'
miRNA:   3'- agUGCUGg-CUGCCcagUAGCAGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 52944 0.67 0.707024
Target:  5'- gUCACGACCGGCGGcugggaGcUCGUCa -3'
miRNA:   3'- -AGUGCUGGCUGCCcaguagC-AGCAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.