miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16309 3' -53.8 NC_004084.1 + 50906 0.65 0.851181
Target:  5'- uUGCgaugGCCCagcaGCGGAucggccuCGACGUCGACGa -3'
miRNA:   3'- cAUGag--CGGG----CGCUU-------GUUGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 42013 0.66 0.843497
Target:  5'- uUGCUCgagugGCCguCGCGAGCGagGCGgUCGACa -3'
miRNA:   3'- cAUGAG-----CGG--GCGCUUGU--UGC-AGCUGc -5'
16309 3' -53.8 NC_004084.1 + 1566 0.66 0.843497
Target:  5'- -aGCcggaGCCCGCGAacggguccaggACGACGUCGccCGg -3'
miRNA:   3'- caUGag--CGGGCGCU-----------UGUUGCAGCu-GC- -5'
16309 3' -53.8 NC_004084.1 + 28833 0.66 0.843497
Target:  5'- -aACU-GCgCGCGAACGACGcccaccCGGCGa -3'
miRNA:   3'- caUGAgCGgGCGCUUGUUGCa-----GCUGC- -5'
16309 3' -53.8 NC_004084.1 + 6483 0.66 0.843497
Target:  5'- --cCUCGCCCGgcUGAGCGAacgUGUCGAa- -3'
miRNA:   3'- cauGAGCGGGC--GCUUGUU---GCAGCUgc -5'
16309 3' -53.8 NC_004084.1 + 2433 0.66 0.83475
Target:  5'- aUGCUCGCCaucgGCGAuCAgccccuccGCGUCGcCGu -3'
miRNA:   3'- cAUGAGCGGg---CGCUuGU--------UGCAGCuGC- -5'
16309 3' -53.8 NC_004084.1 + 44140 0.66 0.83475
Target:  5'- -aGC-CGCUCGCGA-CGACGagGACc -3'
miRNA:   3'- caUGaGCGGGCGCUuGUUGCagCUGc -5'
16309 3' -53.8 NC_004084.1 + 21684 0.66 0.825794
Target:  5'- -aGgUUGCgUUGCGAGCAcagcugACGUCGGCGa -3'
miRNA:   3'- caUgAGCG-GGCGCUUGU------UGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 28979 0.66 0.825794
Target:  5'- -cGCcgCGUUCGCGGugAAgcucgcCGUCGACGg -3'
miRNA:   3'- caUGa-GCGGGCGCUugUU------GCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 19129 0.66 0.825794
Target:  5'- gGUGCUCgacgaucgaGUCCGCGAc--GCGaUCGACGa -3'
miRNA:   3'- -CAUGAG---------CGGGCGCUuguUGC-AGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 16959 0.66 0.816635
Target:  5'- -cACUCGCCgGCcacuGCAagaccucgaucGCGUCGGCc -3'
miRNA:   3'- caUGAGCGGgCGcu--UGU-----------UGCAGCUGc -5'
16309 3' -53.8 NC_004084.1 + 38184 0.66 0.816635
Target:  5'- ----aCGCUCGgcgucaucuCGAAUGACGUCGACGu -3'
miRNA:   3'- caugaGCGGGC---------GCUUGUUGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 41573 0.66 0.816635
Target:  5'- -gGCgaucgCGUCCGUGAGCuagcggagauCGUCGACu -3'
miRNA:   3'- caUGa----GCGGGCGCUUGuu--------GCAGCUGc -5'
16309 3' -53.8 NC_004084.1 + 28977 0.66 0.816635
Target:  5'- cUAC-CaGCgCGCGAcCGACGUCGGCc -3'
miRNA:   3'- cAUGaG-CGgGCGCUuGUUGCAGCUGc -5'
16309 3' -53.8 NC_004084.1 + 28666 0.66 0.816635
Target:  5'- cUAC-CGCCgcaGCGAGCucAACGUCGAg- -3'
miRNA:   3'- cAUGaGCGGg--CGCUUG--UUGCAGCUgc -5'
16309 3' -53.8 NC_004084.1 + 30232 0.66 0.807285
Target:  5'- -gGCgauGUCCGCG-GCGACGUCGAa- -3'
miRNA:   3'- caUGag-CGGGCGCuUGUUGCAGCUgc -5'
16309 3' -53.8 NC_004084.1 + 13995 0.66 0.807285
Target:  5'- cGUGCUCGUCCGUucgGAACGG-GUUGcCGa -3'
miRNA:   3'- -CAUGAGCGGGCG---CUUGUUgCAGCuGC- -5'
16309 3' -53.8 NC_004084.1 + 15704 0.66 0.807285
Target:  5'- -aACUCGCCgaCGCGA-CAGgGUCGuCa -3'
miRNA:   3'- caUGAGCGG--GCGCUuGUUgCAGCuGc -5'
16309 3' -53.8 NC_004084.1 + 7056 0.66 0.807285
Target:  5'- -aACUCGUcuuggCCGCGAucCAGCGguUCGugGa -3'
miRNA:   3'- caUGAGCG-----GGCGCUu-GUUGC--AGCugC- -5'
16309 3' -53.8 NC_004084.1 + 55555 0.67 0.797753
Target:  5'- -gGCUgGCCgCGaCGAACu-CGUCGGCc -3'
miRNA:   3'- caUGAgCGG-GC-GCUUGuuGCAGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.