miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16369 3' -54.4 NC_004084.1 + 22183 0.65 0.78691
Target:  5'- aUUCGCCAAUucgucugcgucguaGaGgUCGA-CCUGAACGUu -3'
miRNA:   3'- -AAGCGGUUG--------------C-CgAGCUaGGACUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 14701 0.65 0.785917
Target:  5'- gUCGCCAucgAUGGCguccuggagcucgUUGAgaucguuguagaucUCCUGAGCGUc -3'
miRNA:   3'- aAGCGGU---UGCCG-------------AGCU--------------AGGACUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 4549 0.66 0.779924
Target:  5'- cUUCGCCAGCucgaaCUCGAUCgUccagucGGGCGCg -3'
miRNA:   3'- -AAGCGGUUGcc---GAGCUAGgA------CUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 43803 0.66 0.779924
Target:  5'- aUUgGCCcaacuAAUGGCUCGAagCUGAuccacuucgucgACGCg -3'
miRNA:   3'- -AAgCGG-----UUGCCGAGCUagGACU------------UGCG- -5'
16369 3' -54.4 NC_004084.1 + 43683 0.66 0.769813
Target:  5'- --gGCCAGCGGCcguacucgCGAUCCcacUGGAggaucCGCg -3'
miRNA:   3'- aagCGGUUGCCGa-------GCUAGG---ACUU-----GCG- -5'
16369 3' -54.4 NC_004084.1 + 23389 0.66 0.769813
Target:  5'- -aCGCCucagcguACaGUucuugUCGAUCCUGGGCGUc -3'
miRNA:   3'- aaGCGGu------UGcCG-----AGCUAGGACUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 12035 0.66 0.769813
Target:  5'- aUCGUCGAUucgaccugaagGGCgUCGGugUCCUGGACGa -3'
miRNA:   3'- aAGCGGUUG-----------CCG-AGCU--AGGACUUGCg -5'
16369 3' -54.4 NC_004084.1 + 53382 0.66 0.768794
Target:  5'- aUCGCCGggucaacguacucGCGGCUgGucgCCaGGACGUc -3'
miRNA:   3'- aAGCGGU-------------UGCCGAgCua-GGaCUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 44035 0.66 0.759559
Target:  5'- cUCGCCcucccaGGC-CGccUCCUGAGCGUc -3'
miRNA:   3'- aAGCGGuug---CCGaGCu-AGGACUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 22039 0.66 0.759559
Target:  5'- gUCGaucuCGGCGGagacgUCG-UCCUGGACGCc -3'
miRNA:   3'- aAGCg---GUUGCCg----AGCuAGGACUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 52042 0.66 0.759559
Target:  5'- gUCGCCGugGaGCggGAugUCCUGGAccuCGCc -3'
miRNA:   3'- aAGCGGUugC-CGagCU--AGGACUU---GCG- -5'
16369 3' -54.4 NC_004084.1 + 54126 0.66 0.759559
Target:  5'- gUCGCCGuCGGCUUccagcaCCUG-ACGCc -3'
miRNA:   3'- aAGCGGUuGCCGAGcua---GGACuUGCG- -5'
16369 3' -54.4 NC_004084.1 + 57327 0.66 0.759559
Target:  5'- -aCGCCuacaaAGCGGCgaaGGUCgUGAagauGCGCg -3'
miRNA:   3'- aaGCGG-----UUGCCGag-CUAGgACU----UGCG- -5'
16369 3' -54.4 NC_004084.1 + 51719 0.66 0.749171
Target:  5'- aUCGCCGGCGuugacCUCGAga-UGGACGUc -3'
miRNA:   3'- aAGCGGUUGCc----GAGCUaggACUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 5482 0.66 0.748126
Target:  5'- -aCGCCGACGGCcagaucgucgcagUCGAcgagucguUCCUagugGGugGCg -3'
miRNA:   3'- aaGCGGUUGCCG-------------AGCU--------AGGA----CUugCG- -5'
16369 3' -54.4 NC_004084.1 + 7981 0.66 0.738664
Target:  5'- -gCGCCGACuGuCUCGGUUCgGAuCGCg -3'
miRNA:   3'- aaGCGGUUGcC-GAGCUAGGaCUuGCG- -5'
16369 3' -54.4 NC_004084.1 + 1832 0.66 0.738664
Target:  5'- -aCGCCGcguucACGGUgUGGcUCCUGcAGCGCg -3'
miRNA:   3'- aaGCGGU-----UGCCGaGCU-AGGAC-UUGCG- -5'
16369 3' -54.4 NC_004084.1 + 772 0.66 0.738664
Target:  5'- --gGCCGAuCGGCUCG-UCgaGGcgACGCg -3'
miRNA:   3'- aagCGGUU-GCCGAGCuAGgaCU--UGCG- -5'
16369 3' -54.4 NC_004084.1 + 57082 0.67 0.728047
Target:  5'- gUCGCCAuucuCGGCgUCGccGUCCUcGGcCGCc -3'
miRNA:   3'- aAGCGGUu---GCCG-AGC--UAGGA-CUuGCG- -5'
16369 3' -54.4 NC_004084.1 + 49210 0.67 0.728047
Target:  5'- gUCGCCuggucCGGCUCcuucaGAUCgUG-ACGCu -3'
miRNA:   3'- aAGCGGuu---GCCGAG-----CUAGgACuUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.