miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16466 5' -59.7 NC_004084.1 + 25025 0.66 0.526001
Target:  5'- --aGCCGCCCGauccagagGAGAUCGcauCCGAu -3'
miRNA:   3'- cugCGGCGGGCg-------CUCUAGCuucGGCU- -5'
16466 5' -59.7 NC_004084.1 + 11727 0.66 0.526001
Target:  5'- aGACGUCGCCgGCGAcGugcUCGAAucGCgGAc -3'
miRNA:   3'- -CUGCGGCGGgCGCU-Cu--AGCUU--CGgCU- -5'
16466 5' -59.7 NC_004084.1 + 5480 0.66 0.515842
Target:  5'- cGACGCCGaCgGCcAGAUCGucgcAGUCGAc -3'
miRNA:   3'- -CUGCGGCgGgCGcUCUAGCu---UCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 792 0.66 0.515842
Target:  5'- cGACGCgCGaCCuCGAGA-CGAAGCgCGAa -3'
miRNA:   3'- -CUGCG-GCgGGcGCUCUaGCUUCG-GCU- -5'
16466 5' -59.7 NC_004084.1 + 47567 0.66 0.515842
Target:  5'- aGACGCCGUucgaggacguUCGCGAGcgCGguGgCGAc -3'
miRNA:   3'- -CUGCGGCG----------GGCGCUCuaGCuuCgGCU- -5'
16466 5' -59.7 NC_004084.1 + 44140 0.66 0.515842
Target:  5'- --aGCCGCUCGCGAcGA-CGAGGaCCu- -3'
miRNA:   3'- cugCGGCGGGCGCU-CUaGCUUC-GGcu -5'
16466 5' -59.7 NC_004084.1 + 26422 0.66 0.515842
Target:  5'- cGCGUgGCCCuGCG-GAUCcAGGUCGAu -3'
miRNA:   3'- cUGCGgCGGG-CGCuCUAGcUUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 29288 0.66 0.49577
Target:  5'- -cCGCCGacaCCGcCGAGGagGAGGCCu- -3'
miRNA:   3'- cuGCGGCg--GGC-GCUCUagCUUCGGcu -5'
16466 5' -59.7 NC_004084.1 + 55413 0.66 0.49577
Target:  5'- gGACGCUGuCCCG-GuAGucuaccCGAAGCCGAu -3'
miRNA:   3'- -CUGCGGC-GGGCgC-UCua----GCUUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 30046 0.66 0.485867
Target:  5'- gGGgGCCGCUCGCGucguugugccAGccGUCGAGGCUGc -3'
miRNA:   3'- -CUgCGGCGGGCGC----------UC--UAGCUUCGGCu -5'
16466 5' -59.7 NC_004084.1 + 41823 0.66 0.485867
Target:  5'- -cCGCCggGUCCGUagGGGGUgaCGAGGCCGAu -3'
miRNA:   3'- cuGCGG--CGGGCG--CUCUA--GCUUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 35191 0.67 0.47997
Target:  5'- --gGCCGCUcgagcuccuccgaauCGuCGGGAUCGA-GCCGAc -3'
miRNA:   3'- cugCGGCGG---------------GC-GCUCUAGCUuCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 39099 0.67 0.476059
Target:  5'- aGACaGUCGCCCGUc-GAUCGucGUCGAc -3'
miRNA:   3'- -CUG-CGGCGGGCGcuCUAGCuuCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 54814 0.67 0.475084
Target:  5'- uGACGCC-CCCGCGAuauucgcggaaacGGUCGAGGgaCCu- -3'
miRNA:   3'- -CUGCGGcGGGCGCU-------------CUAGCUUC--GGcu -5'
16466 5' -59.7 NC_004084.1 + 45534 0.67 0.464421
Target:  5'- gGACGCCGggauggguuggCGCGAGGaccUCGAAGCgGAg -3'
miRNA:   3'- -CUGCGGCgg---------GCGCUCU---AGCUUCGgCU- -5'
16466 5' -59.7 NC_004084.1 + 2054 0.67 0.447247
Target:  5'- cGAUGCCGUacgguggauCCGUGAGGaCGAGGUCa- -3'
miRNA:   3'- -CUGCGGCG---------GGCGCUCUaGCUUCGGcu -5'
16466 5' -59.7 NC_004084.1 + 22317 0.67 0.447247
Target:  5'- uACGCCGCCggacgaagaCGaCGAGGaacUCGAGGgCGAg -3'
miRNA:   3'- cUGCGGCGG---------GC-GCUCU---AGCUUCgGCU- -5'
16466 5' -59.7 NC_004084.1 + 22865 0.67 0.43786
Target:  5'- cGACGaacCCCGUGAGAucacacUCGAGGCCa- -3'
miRNA:   3'- -CUGCggcGGGCGCUCU------AGCUUCGGcu -5'
16466 5' -59.7 NC_004084.1 + 10915 0.67 0.43786
Target:  5'- aGGCGCUGCCaCuCGAGGgccUCGAGGUCa- -3'
miRNA:   3'- -CUGCGGCGG-GcGCUCU---AGCUUCGGcu -5'
16466 5' -59.7 NC_004084.1 + 29479 0.67 0.43786
Target:  5'- cGACGCUGUCgaCGCGcucccCGAGGCCGAc -3'
miRNA:   3'- -CUGCGGCGG--GCGCucua-GCUUCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.