miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16468 5' -55.3 NC_004084.1 + 10459 0.66 0.789458
Target:  5'- cCG-CGAgGCGAUCcaGGACGGCcuGAc -3'
miRNA:   3'- -GCaGCUgCGCUAGuaCCUGCCGcuCU- -5'
16468 5' -55.3 NC_004084.1 + 3179 0.66 0.789458
Target:  5'- uCGUCGACgGCGAggaCGUGaacgaGGCGGUGGcGAa -3'
miRNA:   3'- -GCAGCUG-CGCUa--GUAC-----CUGCCGCU-CU- -5'
16468 5' -55.3 NC_004084.1 + 29688 0.66 0.779749
Target:  5'- uCG-CGACGCGGUCGcGGACgcuguccuGGCuGAGu -3'
miRNA:   3'- -GCaGCUGCGCUAGUaCCUG--------CCG-CUCu -5'
16468 5' -55.3 NC_004084.1 + 47244 0.66 0.779749
Target:  5'- -uUCGAcCGCGAUCGU-GAUcGCGAGGu -3'
miRNA:   3'- gcAGCU-GCGCUAGUAcCUGcCGCUCU- -5'
16468 5' -55.3 NC_004084.1 + 3496 0.66 0.779749
Target:  5'- aCGUCGACaGUGcuggccagcAUCAUGGAgUGGUGAcGAu -3'
miRNA:   3'- -GCAGCUG-CGC---------UAGUACCU-GCCGCU-CU- -5'
16468 5' -55.3 NC_004084.1 + 6252 0.66 0.779749
Target:  5'- --cCGACGCGGUCGacgaugagcacUGGccccCGGCGGGc -3'
miRNA:   3'- gcaGCUGCGCUAGU-----------ACCu---GCCGCUCu -5'
16468 5' -55.3 NC_004084.1 + 48044 0.66 0.769893
Target:  5'- -cUCGACGuCGAacUCAUccGGACGGCGc-- -3'
miRNA:   3'- gcAGCUGC-GCU--AGUA--CCUGCCGCucu -5'
16468 5' -55.3 NC_004084.1 + 7059 0.66 0.769893
Target:  5'- uCGUCuuGGcCGCGAuccagcgguUCGUGGACaaucagGGCGAGGc -3'
miRNA:   3'- -GCAG--CU-GCGCU---------AGUACCUG------CCGCUCU- -5'
16468 5' -55.3 NC_004084.1 + 52147 0.66 0.769893
Target:  5'- uG-CGuCGUGAUCAUGGACGcCGAc- -3'
miRNA:   3'- gCaGCuGCGCUAGUACCUGCcGCUcu -5'
16468 5' -55.3 NC_004084.1 + 52678 0.66 0.7599
Target:  5'- uCGUCGAgGCGAUCAUcccgaucgaGGAccuCGGCccGAGc -3'
miRNA:   3'- -GCAGCUgCGCUAGUA---------CCU---GCCG--CUCu -5'
16468 5' -55.3 NC_004084.1 + 44351 0.66 0.7599
Target:  5'- aCGUCGGuCGCGGUgAca-ACGGCGAGc -3'
miRNA:   3'- -GCAGCU-GCGCUAgUaccUGCCGCUCu -5'
16468 5' -55.3 NC_004084.1 + 2451 0.66 0.74978
Target:  5'- cCGUCGACGaGAUCcgagccacgcUGGAUcGCGAGGa -3'
miRNA:   3'- -GCAGCUGCgCUAGu---------ACCUGcCGCUCU- -5'
16468 5' -55.3 NC_004084.1 + 36163 0.66 0.74978
Target:  5'- -aUCGACGuCGAcgUCcgGGuugaguaacuCGGCGAGAu -3'
miRNA:   3'- gcAGCUGC-GCU--AGuaCCu---------GCCGCUCU- -5'
16468 5' -55.3 NC_004084.1 + 9157 0.66 0.739546
Target:  5'- cCGUCGcCGUGA-CGUGGACGuCGAu- -3'
miRNA:   3'- -GCAGCuGCGCUaGUACCUGCcGCUcu -5'
16468 5' -55.3 NC_004084.1 + 41369 0.66 0.739546
Target:  5'- uCGUCGACGauuacgaacucuCGAUCGaGGuagAgGGCGAGGa -3'
miRNA:   3'- -GCAGCUGC------------GCUAGUaCC---UgCCGCUCU- -5'
16468 5' -55.3 NC_004084.1 + 23038 0.67 0.729207
Target:  5'- uCGUCGACGUGAUCuUGG-CGcacuucGCGAu- -3'
miRNA:   3'- -GCAGCUGCGCUAGuACCuGC------CGCUcu -5'
16468 5' -55.3 NC_004084.1 + 5341 0.67 0.718775
Target:  5'- aCGUCG-C-CGAgc--GGGCGGCGAGGa -3'
miRNA:   3'- -GCAGCuGcGCUaguaCCUGCCGCUCU- -5'
16468 5' -55.3 NC_004084.1 + 30416 0.67 0.718775
Target:  5'- aCGUCGACgggcgGCGA-CGgaaGcGAUGGCGAGGa -3'
miRNA:   3'- -GCAGCUG-----CGCUaGUa--C-CUGCCGCUCU- -5'
16468 5' -55.3 NC_004084.1 + 8408 0.67 0.718775
Target:  5'- cCGcUCGgcgacaACGUGAUCAUGGGCgaGGCGGa- -3'
miRNA:   3'- -GC-AGC------UGCGCUAGUACCUG--CCGCUcu -5'
16468 5' -55.3 NC_004084.1 + 49664 0.67 0.70826
Target:  5'- gGUCGACaUGAUCuccgaAUGGAcCGGCGAc- -3'
miRNA:   3'- gCAGCUGcGCUAG-----UACCU-GCCGCUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.