miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16476 3' -60.3 NC_004084.1 + 298 0.66 0.543732
Target:  5'- aCGACGACCgccgaCGAGAacccgaaGCagGGGCGCg- -3'
miRNA:   3'- -GCUGCUGGg----GCUCUg------CGa-CCUGCGgg -5'
16476 3' -60.3 NC_004084.1 + 35397 0.66 0.543732
Target:  5'- uCGACGACcuuCCCGAGAgCGUUGuugagaGCGCgCa -3'
miRNA:   3'- -GCUGCUG---GGGCUCU-GCGACc-----UGCGgG- -5'
16476 3' -60.3 NC_004084.1 + 19017 0.66 0.543732
Target:  5'- aCGACGACgCCGAGcuCGaaCUGGACuucgaaaccauGCUCg -3'
miRNA:   3'- -GCUGCUGgGGCUCu-GC--GACCUG-----------CGGG- -5'
16476 3' -60.3 NC_004084.1 + 27223 0.66 0.533629
Target:  5'- gCGACGACgUCGAcGCGCUGuuC-CCCa -3'
miRNA:   3'- -GCUGCUGgGGCUcUGCGACcuGcGGG- -5'
16476 3' -60.3 NC_004084.1 + 16886 0.66 0.532622
Target:  5'- gCGGCGucuGCUCCGAucGACGCUGuGAgcaacguCGCCa -3'
miRNA:   3'- -GCUGC---UGGGGCU--CUGCGAC-CU-------GCGGg -5'
16476 3' -60.3 NC_004084.1 + 56448 0.66 0.527599
Target:  5'- aCGACGAUCUCGAcGGCGCgcucucggucuuccGuGACGCUg -3'
miRNA:   3'- -GCUGCUGGGGCU-CUGCGa-------------C-CUGCGGg -5'
16476 3' -60.3 NC_004084.1 + 11843 0.66 0.523593
Target:  5'- aCGACGAUCgCCGcGAUGCc-GAUGCCg -3'
miRNA:   3'- -GCUGCUGG-GGCuCUGCGacCUGCGGg -5'
16476 3' -60.3 NC_004084.1 + 32213 0.66 0.523593
Target:  5'- -aGCG-CCUCGAGAUGCUccucgacGACGCCg -3'
miRNA:   3'- gcUGCuGGGGCUCUGCGAc------CUGCGGg -5'
16476 3' -60.3 NC_004084.1 + 23796 0.66 0.523593
Target:  5'- -aGCGACUCCcAGACGgcaaUGGACGCg- -3'
miRNA:   3'- gcUGCUGGGGcUCUGCg---ACCUGCGgg -5'
16476 3' -60.3 NC_004084.1 + 23736 0.66 0.523593
Target:  5'- -aGCGACUCCcAGACGgcaaUGGACGCg- -3'
miRNA:   3'- gcUGCUGGGGcUCUGCg---ACCUGCGgg -5'
16476 3' -60.3 NC_004084.1 + 23766 0.66 0.523593
Target:  5'- -aGCGACUCCcAGACGgcaaUGGACGCg- -3'
miRNA:   3'- gcUGCUGGGGcUCUGCg---ACCUGCGgg -5'
16476 3' -60.3 NC_004084.1 + 23676 0.66 0.523593
Target:  5'- -aGCGACUCCcAGACGgcaaUGGACGCg- -3'
miRNA:   3'- gcUGCUGGGGcUCUGCg---ACCUGCGgg -5'
16476 3' -60.3 NC_004084.1 + 53006 0.66 0.523593
Target:  5'- gGACGGCCaCGAGACcuaCUGGAUcgagcggaagaaGUCCg -3'
miRNA:   3'- gCUGCUGGgGCUCUGc--GACCUG------------CGGG- -5'
16476 3' -60.3 NC_004084.1 + 23646 0.66 0.523593
Target:  5'- -aGCGACUCCcAGACGgcaaUGGACGCg- -3'
miRNA:   3'- gcUGCUGGGGcUCUGCg---ACCUGCGgg -5'
16476 3' -60.3 NC_004084.1 + 45554 0.66 0.523593
Target:  5'- gCGAgGACCUCGAaGCGgaGuACGCCg -3'
miRNA:   3'- -GCUgCUGGGGCUcUGCgaCcUGCGGg -5'
16476 3' -60.3 NC_004084.1 + 21383 0.66 0.523593
Target:  5'- uCGACGACCgUGAGGCgGCgauGACcgGCCUc -3'
miRNA:   3'- -GCUGCUGGgGCUCUG-CGac-CUG--CGGG- -5'
16476 3' -60.3 NC_004084.1 + 7300 0.66 0.51363
Target:  5'- gGACGACaacaccgauUCCGAGACGgacaaagcgaUGGAagaCGCCCc -3'
miRNA:   3'- gCUGCUG---------GGGCUCUGCg---------ACCU---GCGGG- -5'
16476 3' -60.3 NC_004084.1 + 8946 0.66 0.51363
Target:  5'- cCGACGACUCCGAGGacaGCgGcGACGaagaCg -3'
miRNA:   3'- -GCUGCUGGGGCUCUg--CGaC-CUGCgg--G- -5'
16476 3' -60.3 NC_004084.1 + 56385 0.66 0.503745
Target:  5'- uCGAcauCGACCUCucgGAGACGCUcGGCuCCCg -3'
miRNA:   3'- -GCU---GCUGGGG---CUCUGCGAcCUGcGGG- -5'
16476 3' -60.3 NC_004084.1 + 40901 0.66 0.503745
Target:  5'- gCGGCGACgCUgGAGGC-CUGGACGaggagcagcuaCCg -3'
miRNA:   3'- -GCUGCUG-GGgCUCUGcGACCUGCg----------GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.