miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16481 5' -57.8 NC_004084.1 + 3449 0.66 0.638194
Target:  5'- gUGaCCugUCGGAUcGCGAGcGCCgGGGg -3'
miRNA:   3'- -AC-GGugGGCUUGcCGUUCuUGGgCCC- -5'
16481 5' -57.8 NC_004084.1 + 37577 0.66 0.627497
Target:  5'- gUGCCACCCu--CGGCGAGcgaguUCUGGu -3'
miRNA:   3'- -ACGGUGGGcuuGCCGUUCuu---GGGCCc -5'
16481 5' -57.8 NC_004084.1 + 31990 0.66 0.627497
Target:  5'- aGCCGCCaGAGCGGgCcugGAGGGCUCGa- -3'
miRNA:   3'- aCGGUGGgCUUGCC-G---UUCUUGGGCcc -5'
16481 5' -57.8 NC_004084.1 + 27530 0.66 0.621081
Target:  5'- gGCUACCUGGAUGGaccgguggccgcgcaCAAGGgccuCCCGGa -3'
miRNA:   3'- aCGGUGGGCUUGCC---------------GUUCUu---GGGCCc -5'
16481 5' -57.8 NC_004084.1 + 10273 0.66 0.616805
Target:  5'- aGCCACUCGAGCGGgAGuuGCUCa-- -3'
miRNA:   3'- aCGGUGGGCUUGCCgUUcuUGGGccc -5'
16481 5' -57.8 NC_004084.1 + 10678 0.66 0.616805
Target:  5'- cGCCAaCCGGAUGGCGGuca-UCGGGa -3'
miRNA:   3'- aCGGUgGGCUUGCCGUUcuugGGCCC- -5'
16481 5' -57.8 NC_004084.1 + 29314 0.66 0.616805
Target:  5'- cGCUACCUGGAUGGCGcggaGGAcguCCCa-- -3'
miRNA:   3'- aCGGUGGGCUUGCCGU----UCUu--GGGccc -5'
16481 5' -57.8 NC_004084.1 + 23 0.66 0.606125
Target:  5'- aGCCAUCCGuGCGuGCA--GACCCGc- -3'
miRNA:   3'- aCGGUGGGCuUGC-CGUucUUGGGCcc -5'
16481 5' -57.8 NC_004084.1 + 43184 0.66 0.606125
Target:  5'- aGUCGCCCGAGgaGguGGAcgauGCCCGGu -3'
miRNA:   3'- aCGGUGGGCUUgcCguUCU----UGGGCCc -5'
16481 5' -57.8 NC_004084.1 + 8089 0.66 0.606125
Target:  5'- uUGCCGuuCGggUGGCA-GAACCgCGa- -3'
miRNA:   3'- -ACGGUggGCuuGCCGUuCUUGG-GCcc -5'
16481 5' -57.8 NC_004084.1 + 56200 0.66 0.606125
Target:  5'- gGCCGaagCGAGCGGCGAGGACaUCGa- -3'
miRNA:   3'- aCGGUgg-GCUUGCCGUUCUUG-GGCcc -5'
16481 5' -57.8 NC_004084.1 + 7466 0.66 0.599727
Target:  5'- gGCgACUCGAGCGGCGAcggcgaaggcgagacGAGCaagucggccgaCGGGg -3'
miRNA:   3'- aCGgUGGGCUUGCCGUU---------------CUUGg----------GCCC- -5'
16481 5' -57.8 NC_004084.1 + 44267 0.66 0.595467
Target:  5'- gGCCuuCaCGAcgACGGCGAGGugUCGGu -3'
miRNA:   3'- aCGGugG-GCU--UGCCGUUCUugGGCCc -5'
16481 5' -57.8 NC_004084.1 + 21475 0.66 0.595467
Target:  5'- cGCC-CUCGAggGCGGCGAucGCCuCGGu -3'
miRNA:   3'- aCGGuGGGCU--UGCCGUUcuUGG-GCCc -5'
16481 5' -57.8 NC_004084.1 + 16415 0.66 0.584838
Target:  5'- gGCCACUCGAgcaaagACGGCGucGAUgUGGGc -3'
miRNA:   3'- aCGGUGGGCU------UGCCGUucUUGgGCCC- -5'
16481 5' -57.8 NC_004084.1 + 14631 0.66 0.584838
Target:  5'- cGCCGCCgGAcucuccgcCGGCGAGcGCCCa-- -3'
miRNA:   3'- aCGGUGGgCUu-------GCCGUUCuUGGGccc -5'
16481 5' -57.8 NC_004084.1 + 4270 0.67 0.574246
Target:  5'- cGCCcuucgACgCGAACGGCGucAGGugCUGGa -3'
miRNA:   3'- aCGG-----UGgGCUUGCCGU--UCUugGGCCc -5'
16481 5' -57.8 NC_004084.1 + 29014 0.67 0.573189
Target:  5'- aUGCaggaGCCCaucgaGGGCGGCAucaccuuccaggaGGGACgCGGGa -3'
miRNA:   3'- -ACGg---UGGG-----CUUGCCGU-------------UCUUGgGCCC- -5'
16481 5' -57.8 NC_004084.1 + 54745 0.67 0.573189
Target:  5'- cGCCAgCCCGGugGGCGu--GCCaucggucUGGGu -3'
miRNA:   3'- aCGGU-GGGCUugCCGUucuUGG-------GCCC- -5'
16481 5' -57.8 NC_004084.1 + 27123 0.67 0.563699
Target:  5'- gGCUACCCcAACGaUAGGGACCCGcGa -3'
miRNA:   3'- aCGGUGGGcUUGCcGUUCUUGGGC-Cc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.